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ACD20_4

Alias: ACD20_33459.44052.13

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_4_1

Not on your lists

comp(382..2103)
DNA (1722bp) protein (574aa)
SpoIID/LytB domain-containing protein
SpoIID/LytB domain protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHN1_9FIRM (db=UNIREF evalue=4.0e-40 bit_score=169.0 identity=31.67 coverage=73.1707317073171)
seg (db=Seg db_id=seg from=5 to=19)
seg (db=Seg db_id=seg from=236 to=249)
ACD20_4_2

Not on your lists

2291..3073
DNA (783bp) protein (261aa)
2291..3073 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE03356.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_4_3

Not on your lists

comp(3083..3301)
DNA (219bp) protein (73aa)
3083..3301 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03357.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_4_4

Not on your lists

comp(3381..4994)
DNA (1614bp) protein (538aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Cyanothece RepID=B1WTK1_CYAA5 (db=UNIREF evalue=2.0e-123 bit_score=446.0 identity=43.04 coverage=98.8847583643123)
seg (db=Seg db_id=seg from=128 to=140)
ACD20_4_5

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5107..6186
DNA (1080bp) protein (360aa)
radical SAM domain-containing protein
radical SAM domain-containing protein
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit n=1 Tax=Thermincola sp. JR RepID=D5X7P9_9FIRM (db=UNIREF evalue=1.0e-99 bit_score=366.0 identity=56.44 coverage=89.1666666666667)
seg (db=Seg db_id=seg from=12 to=25)
cytoplasmic kelly wrighton (11/15/12)
ACD20_4_6

Not on your lists

6351..7688
DNA (1338bp) protein (446aa)
Diaminopimelate decarboxylase n=2 Tax=Nostocaceae RepID=Q8YST7_ANASP (db=UNIREF evalue=2.0e-140 bit_score=502.0 identity=54.79 coverage=97.085201793722)
diaminopimelate decarboxylase
diaminopimelate decarboxylase
coiled-coil (db=Coil db_id=coil from=187 to=208 evalue=NA)
ACD20_4_7

Not on your lists

7702..8601
DNA (900bp) protein (300aa)
Conserved hypothetical protein CHP00159
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
seg (db=Seg db_id=seg from=25 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
ACD20_4_8

Not on your lists

8697..9443
DNA (747bp) protein (249aa)
hypothetical protein
TM1631-like (db=superfamily db_id=SSF117396 from=5 to=244 evalue=4.6e-74)
no description (db=Gene3D db_id=G3DSA:3.20.20.410 from=6 to=242 evalue=3.2e-73 interpro_id=IPR002763 interpro_description=Protein of unknown function DUF72)
DUF72 (db=HMMPfam db_id=PF01904 from=23 to=242 evalue=2.2e-65 interpro_id=IPR002763 interpro_description=Protein of unknown function DUF72)
ACD20_4_9

Not on your lists

comp(9653..11086)
DNA (1434bp) protein (478aa)
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
seg (db=Seg db_id=seg from=7 to=18)
seg (db=Seg db_id=seg from=55 to=68)
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR13734 from=74 to=469 evalue=4.6e-75)
ACD20_4_10

Not on your lists

comp(11070..11819)
DNA (750bp) protein (250aa)
hypothetical protein
seg (db=Seg db_id=seg from=150 to=163)
seg (db=Seg db_id=seg from=45 to=56)
Methyltrans_RNA (db=HMMPfam db_id=PF04452 from=19 to=243 evalue=2.3e-61 interpro_id=IPR006700 interpro_description=Ribosomal RNA small subunit methyltransferase E GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: methyltransferase activity (GO:0008168))
ACD20_4_11

Not on your lists

12370..13212
DNA (843bp) protein (281aa)
FlgL2; flagellin-like protein
coiled-coil (db=Coil db_id=coil from=211 to=239 evalue=NA)
Phase 1 flagellin (db=superfamily db_id=SSF64518 from=1 to=280 evalue=3.5e-80)
no description (db=Gene3D db_id=G3DSA:1.20.1330.10 from=54 to=236 evalue=1.1e-40)
ACD20_4_12

Not on your lists

13399..14241
DNA (843bp) protein (281aa)
flagellin/flagellar hook associated protein
seg (db=Seg db_id=seg from=173 to=186)
coiled-coil (db=Coil db_id=coil from=215 to=239 evalue=NA)
Phase 1 flagellin (db=superfamily db_id=SSF64518 from=1 to=280 evalue=8.4e-80)
ACD20_4_13

Not on your lists

comp(14234..14482)
DNA (249bp) protein (83aa)
14234..14482 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03338.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_4_14

Not on your lists

comp(14460..15131)
DNA (672bp) protein (224aa)
putative phosphoribosyltransferase
PRTase-like (db=superfamily db_id=SSF53271 from=5 to=215 evalue=5.2e-34)
Pribosyltran (db=HMMPfam db_id=PF00156 from=5 to=162 evalue=3.1e-23 interpro_id=IPR000836 interpro_description=Phosphoribosyltransferase GO=Biological Process: nucleoside metabolic process (GO:0009116))
no description (db=Gene3D db_id=G3DSA:3.40.50.2020 from=13 to=201 evalue=8.9e-05)
ACD20_4_15

Not on your lists

comp(15385..16053)
DNA (669bp) protein (223aa)
upp; uracil phosphoribosyltransferase (EC:2.4.2.9)
upp: uracil phosphoribosyltransferase (db=HMMTigr db_id=TIGR01091 from=9 to=221 evalue=3.4e-85 interpro_id=IPR005765 interpro_description=Uracil phosphoribosyl transferase GO=Molecular Function: uracil phosphoribosyltransferase activity (GO:0004845), Biological Process: uracil salvage (GO:0006223))
URIDINE KINASE RELATED (db=HMMPanther db_id=PTHR10285 from=10 to=221 evalue=6.2e-73)
URACIL PHOSPHORIBOSYLTRANSFERASE (db=HMMPanther db_id=PTHR10285:SF1 from=10 to=221 evalue=6.2e-73)
ACD20_4_16

Not on your lists

16263..16988
DNA (726bp) protein (242aa)
hypothetical protein
seg (db=Seg db_id=seg from=185 to=193)
seg (db=Seg db_id=seg from=214 to=228)
Trimeric LpxA-like enzymes (db=superfamily db_id=SSF51161 from=53 to=229 evalue=5.8e-32 interpro_id=IPR011004 interpro_description=Trimeric LpxA-like GO=Molecular Function: transferase activity (GO:0016740))
ACD20_4_17

Not on your lists

17246..18097
DNA (852bp) protein (284aa)
Putative uncharacterized protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CMM5_ROBBH (db=UNIREF evalue=3.0e-85 bit_score=318.0 identity=56.52 coverage=96.4788732394366)
hypothetical protein
hypothetical protein
DUF849 (db=HMMPfam db_id=PF05853 from=3 to=273 evalue=1.9e-74 interpro_id=IPR008567 interpro_description=Protein of unknown function DUF849, prokaryotic)
ACD20_4_18

Not on your lists

18224..18415
DNA (192bp) protein (64aa)
18224..18415 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03343.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_4_19

Not on your lists

18730..19287
DNA (558bp) protein (186aa)
bifunctional DNA primase/polymerase
Bifunctional DNA primase/polymerase n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5QYX3_9FIRM (db=UNIREF evalue=2.0e-31 bit_score=138.0 identity=44.81 coverage=95.6989247311828)
Prim-Pol (db=HMMPfam db_id=PF09250 from=7 to=179 evalue=5.9e-26 interpro_id=IPR015330 interpro_description=DNA primase/polymerase, bifunctional, N-terminal)
Prim-pol domain (db=superfamily db_id=SSF56747 from=1 to=181 evalue=4.4e-19)
ACD20_4_20

Not on your lists

comp(19352..21004)
DNA (1653bp) protein (551aa)
Putative uncharacterized protein n=1 Tax=Aminobacterium colombiense DSM 12261 RepID=D5EGJ8_AMICL (db=UNIREF evalue=0.0 bit_score=785.0 identity=65.75 coverage=98.9110707803993)
hypothetical protein
hypothetical protein
PEP carboxykinase-like (db=superfamily db_id=SSF53795 from=232 to=547 evalue=1.1e-66)
ACD20_4_21

Not on your lists

comp(21048..22187)
DNA (1140bp) protein (380aa)
sodium ion-translocating decarboxylase subunit beta (EC:4.1.1.3)
sodium ion-translocating decarboxylase subunit beta (EC:4.1.1.3)
Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit n=2 Tax=Brachyspira RepID=C0QY08_BRAHW (db=UNIREF evalue=4.0e-126 bit_score=454.0 identity=73.58 coverage=88.1578947368421)
seg (db=Seg db_id=seg from=361 to=379)
membrane targeted with 9 internal helices. K01572 oxaloacetate decarboxylase, beta subunit kelly wrighton (11/15/12)
ACD20_4_22

Not on your lists

comp(22205..24016)
DNA (1812bp) protein (604aa)
biotin/lipoyl attachment domain-containing protein
biotin/lipoyl attachment domain-containing protein
Strongly similar to oxaloacetate (OadA) or methylmalonyl-CoA decarboxylase (MmdA) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0F0_9BACT (db=UNIREF evalue=0.0 bit_score=818.0 identity=62.36 coverage=99.6688741721854)
CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE (db=HMMPanther db_id=PTHR18866 from=1 to=603 evalue=1.4e-93)
OAA decarboyxlase-cytoplasmic subunit but biotin binding subunit- likely K01571 oxaloacetate decarboxylase, alpha subunit kelly wrighton (11/15/12)
ACD20_4_23

Not on your lists

comp(24020..24265)
DNA (246bp) protein (82aa)
seg (db=Seg db_id=seg from=61 to=79)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
OAD_gamma (db=HMMPfam db_id=PF04277 from=9 to=78 evalue=7.4e-10 interpro_id=IPR005899 interpro_description=Sodium ion-translocating decarboxylase GO=Biological Process: sodium ion transport (GO:0006814), Molecular Function: oxaloacetate decarboxylase activity (GO:0008948), Molecular Function: sodium ion transmembrane transporter activity (GO:0015081), Cellular Component: membrane (GO:0016020))
blast hit: sodium pump decarboxylase gamma subunit K01573 oxaloacetate decarboxylase, gamma subunit kelly wrighton (11/15/12)
ACD20_4_24

Not on your lists

comp(24256..25029)
DNA (774bp) protein (258aa)
BirA bifunctional protein, biotin operon repressor, biotin/acetyl-CoA-carboxylase ligase
Class II aaRS and biotin synthetases (db=superfamily db_id=SSF55681 from=1 to=209 evalue=7.1e-55)
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=1 to=209 evalue=1.4e-46)
birA_ligase: biotin-[acetyl-CoA-carboxyla (db=HMMTigr db_id=TIGR00121 from=16 to=257 evalue=9.7e-43 interpro_id=IPR004408 interpro_description=Biotin--acetyl-CoA-carboxylase ligase GO=Molecular Function: biotin-[acetyl-CoA-carboxylase] ligase activity (GO:0004077), Biological Process: protein modification process (GO:0006464))
ACD20_4_25

Not on your lists

25524..27656
DNA (2133bp) protein (711aa)
hppA1; pyrophosphate-energized proton pump HppA (EC:3.6.1.1)
hppA1; pyrophosphate-energized proton pump HppA (EC:3.6.1.1)
V-type H(+)-translocating pyrophosphatase n=10 Tax=Thermoanaerobacter RepID=B0K4Z0_THEPX (db=UNIREF evalue=0.0 bit_score=677.0 identity=63.82 coverage=88.3263009845288)
seg (db=Seg db_id=seg from=64 to=81)
membrane bound (10 psort) 16 internal helices kelly wrighton (11/15/12)
ACD20_4_26

Not on your lists

27753..27992
DNA (240bp) protein (80aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=26)
Uncharacterized protein {ECO:0000313|EMBL:EKE03351.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_4_27

Not on your lists

comp(28332..28592)
DNA (261bp) protein (87aa)
hypothetical protein
Cupin_3 (db=HMMPfam db_id=PF05899 from=13 to=83 evalue=1.0e-22 interpro_id=IPR008579 interpro_description=Protein of unknown function DUF861, cupin-3)
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=11 to=85 evalue=4.7e-19 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=18 to=85 evalue=2.0e-09 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
ACD20_4_28

Not on your lists

comp(28620..29162)
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZVT0_9BACT (db=UNIREF evalue=1.0e-16 bit_score=89.0 identity=31.76 coverage=81.2154696132597)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=105)
ACD20_4_29

Not on your lists

29375..32728
DNA (3354bp) protein (1118aa)
hypothetical protein (db=KEGG evalue=5.0e-14 bit_score=84.3 identity=21.16 coverage=83.3631484794276)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=90 to=104)
seg (db=Seg db_id=seg from=48 to=66)
ACD20_4_30

Not on your lists

33292..34224
DNA (933bp) protein (311aa)
biotin synthase (EC:2.8.1.6)
Biotin synthase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ93_9FIRM (db=UNIREF evalue=3.0e-73 bit_score=279.0 identity=46.94 coverage=92.9260450160772)
bioB: biotin synthase (db=HMMTigr db_id=TIGR00433 from=13 to=306 evalue=4.8e-115 interpro_id=IPR002684 interpro_description=Biotin synthase GO=Molecular Function: biotin synthase activity (GO:0004076), Biological Process: biotin biosynthetic process (GO:0009102))
BIOTIN SYNTHASE (db=HMMPanther db_id=PTHR22976 from=4 to=308 evalue=1.9e-101)
Displaying items 1-30 of 43 in total

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