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ACD20_25

Alias: ACD20_16493.43270.13

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_25_1

Not on your lists

comp(36..1052)
DNA (1017bp) protein (339aa)
seg (db=Seg db_id=seg from=326 to=331)
seg (db=Seg db_id=seg from=107 to=165)
seg (db=Seg db_id=seg from=13 to=58)
ARM repeat (db=superfamily db_id=SSF48371 from=168 to=335 evalue=1.5e-07 interpro_id=IPR016024 interpro_description=Armadillo-type fold GO=Molecular Function: binding (GO:0005488))
ACD20_25_2

Not on your lists

comp(1267..1695)
DNA (429bp) protein (143aa)
seg (db=Seg db_id=seg from=8 to=19)
seg (db=Seg db_id=seg from=96 to=111)
seg (db=Seg db_id=seg from=117 to=129)
Uncharacterized protein {ECO:0000313|EMBL:EKE04345.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_25_3

Not on your lists

comp(1705..2568)
DNA (864bp) protein (288aa)
seg (db=Seg db_id=seg from=34 to=50)
seg (db=Seg db_id=seg from=84 to=124)
seg (db=Seg db_id=seg from=263 to=277)
Uncharacterized protein {ECO:0000313|EMBL:EKE04346.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_25_4

Not on your lists

2803..3426
DNA (624bp) protein (208aa)
seg (db=Seg db_id=seg from=4 to=20)
UPF0153 (db=HMMPfam db_id=PF03692 from=31 to=142 evalue=6.5e-08 interpro_id=IPR005358 interpro_description=Uncharacterised protein family UPF0153)
Uncharacterized protein {ECO:0000313|EMBL:EKE04347.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_25_5

Not on your lists

3450..3929
DNA (480bp) protein (160aa)
UPF0153 (db=HMMPfam db_id=PF03692 from=19 to=124 evalue=1.8e-07 interpro_id=IPR005358 interpro_description=Uncharacterised protein family UPF0153)
Uncharacterized protein {ECO:0000313|EMBL:EKE04348.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_25_6

Not on your lists

comp(3930..4466)
DNA (537bp) protein (179aa)
nucleoside recognition domain-containing protein
seg (db=Seg db_id=seg from=153 to=169)
transmembrane_regions (db=TMHMM db_id=tmhmm from=125 to=147)
transmembrane_regions (db=TMHMM db_id=tmhmm from=76 to=98)
ACD20_25_7

Not on your lists

comp(4466..5107)
DNA (642bp) protein (214aa)
Nucleoside recognition domain protein n=1 Tax=bacterium Ellin514 RepID=B9XEM7_9BACT (db=UNIREF evalue=7.0e-60 bit_score=233.0 identity=55.45 coverage=93.4579439252336)
nucleoside recognition domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=162 to=184)
ACD20_25_8

Not on your lists

5453..6403
DNA (951bp) protein (317aa)
5453..6403 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE04351.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_25_9

Not on your lists

6420..7391
DNA (972bp) protein (324aa)
6420..7391 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE04352.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_25_10

Not on your lists

comp(7402..8535)
DNA (1134bp) protein (378aa)
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
seg (db=Seg db_id=seg from=11 to=25)
seg (db=Seg db_id=seg from=274 to=292)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR21015 from=4 to=314 evalue=7.3e-108)
ACD20_25_11

Not on your lists

comp(8525..9700)
DNA (1176bp) protein (392aa)
stage V sporulation protein E
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
seg (db=Seg db_id=seg from=251 to=262)
seg (db=Seg db_id=seg from=195 to=214)
ACD20_25_12

Not on your lists

comp(9675..11036)
DNA (1362bp) protein (454aa)
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
seg (db=Seg db_id=seg from=117 to=127)
coiled-coil (db=Coil db_id=coil from=35 to=56 evalue=NA)
murD: UDP-N-acetylmuramoylalanine--D-glutama (db=HMMTigr db_id=TIGR01087 from=9 to=449 evalue=9.2e-131 interpro_id=IPR005762 interpro_description=UDP-N-acetylmuramoylalanine-D-glutamate ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Molecular Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase activity (GO:0008764), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Biologic
ACD20_25_13

Not on your lists

comp(11055..12020)
DNA (966bp) protein (322aa)
mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
transmembrane_regions (db=TMHMM db_id=tmhmm from=223 to=242)
seg (db=Seg db_id=seg from=8 to=18)
ACD20_25_14

Not on your lists

comp(12029..13390)
DNA (1362bp) protein (454aa)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase
murF: UDP-N-acetylmuramoyl-tripeptide--D-ala (db=HMMTigr db_id=TIGR01143 from=30 to=446 evalue=4.1e-134 interpro_id=IPR005863 interpro_description=UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766), Biological Process: peptidog
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=114 to=448 evalue=3.2e-97)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE--D-ALANYL-D- ALANYL LIGASE (db=HMMPanther db_id=PTHR23135:SF3 from=114 to=448 evalue=3.2e-97 interpro_id=IPR005863 interpro_description=UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase acti
ACD20_25_15

Not on your lists

13573..14298
DNA (726bp) protein (242aa)
seg (db=Seg db_id=seg from=204 to=212)
seg (db=Seg db_id=seg from=107 to=121)
transmembrane_regions (db=TMHMM db_id=tmhmm from=11 to=28)
Uncharacterized protein {ECO:0000313|EMBL:EKE04358.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_25_16

Not on your lists

14314..15807
DNA (1494bp) protein (498aa)
hypothetical protein
seg (db=Seg db_id=seg from=417 to=428)
seg (db=Seg db_id=seg from=365 to=380)
seg (db=Seg db_id=seg from=128 to=137)
ACD20_25_17

Not on your lists

15951..16160
DNA (210bp) protein (70aa)
seg (db=Seg db_id=seg from=58 to=69)
seg (db=Seg db_id=seg from=15 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
Uncharacterized protein {ECO:0000313|EMBL:EKE04360.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_25_18

Not on your lists

comp(16163..16366)
DNA (204bp) protein (68aa)
16163..16366 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04361.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_25_19

Not on your lists

comp(16519..17514)
DNA (996bp) protein (332aa)
seg (db=Seg db_id=seg from=71 to=82)
transmembrane_regions (db=TMHMM db_id=tmhmm from=299 to=321)
transmembrane_regions (db=TMHMM db_id=tmhmm from=220 to=242)
transmembrane_regions (db=TMHMM db_id=tmhmm from=167 to=189)
ACD20_25_20

Not on your lists

17650..18297
DNA (648bp) protein (216aa)
phosphoesterase PHP-like
PHP domain-like (db=superfamily db_id=SSF89550 from=19 to=215 evalue=1.4e-36 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
PHP (db=HMMPfam db_id=PF02811 from=21 to=151 evalue=6.5e-16 interpro_id=IPR004013 interpro_description=PHP, C-terminal GO=Molecular Function: catalytic activity (GO:0003824))
no description (db=HMMSmart db_id=SM00481 from=20 to=84 evalue=2.2e-11 interpro_id=IPR003141 interpro_description=Polymerase/histidinol phosphatase, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260))
ACD20_25_21

Not on your lists

comp(18495..19400)
DNA (906bp) protein (302aa)
seg (db=Seg db_id=seg from=25 to=40)
seg (db=Seg db_id=seg from=63 to=81)
seg (db=Seg db_id=seg from=131 to=151)
seg (db=Seg db_id=seg from=177 to=189)
ACD20_25_22

Not on your lists

comp(19520..24040)
DNA (4521bp) protein (1507aa)
hypothetical protein (db=KEGG evalue=6.0e-22 bit_score=110.0 identity=21.54 coverage=53.4173855341739)
seg (db=Seg db_id=seg from=1278 to=1295)
seg (db=Seg db_id=seg from=1229 to=1238)
seg (db=Seg db_id=seg from=136 to=147)
ACD20_25_23

Not on your lists

comp(24361..26685)
DNA (2325bp) protein (775aa)
Penicillin-binding protein, 1A family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KK67_CYAP7 (db=UNIREF evalue=5.0e-144 bit_score=515.0 identity=46.74 coverage=76.1290322580645)
penicillin-binding protein (EC:2.4.1.129)
penicillin-binding protein (EC:2.4.1.129)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
ACD20_25_24

Not on your lists

comp(26867..28924)
DNA (2058bp) protein (686aa)
Glycyl-tRNA synthetase beta subunit n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1Q8_9CLOT (db=UNIREF evalue=7.0e-150 bit_score=535.0 identity=41.13 coverage=99.4169096209913)
glyS; glycyl-tRNA synthetase subunit beta
glyS; glycyl-tRNA synthetase subunit beta
tRNA_synt_2f (db=HMMPfam db_id=PF02092 from=4 to=553 evalue=2.2e-197 interpro_id=IPR002311 interpro_description=Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: glycine-tRNA ligase activity (GO:0004820), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: glycyl-tRNA aminoacylation (GO:0006426))
ACD20_25_25

Not on your lists

29046..29651
DNA (606bp) protein (202aa)
peptidase S1 and S6 chymotrypsin/Hap
seg (db=Seg db_id=seg from=25 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
coiled-coil (db=Coil db_id=coil from=173 to=194 evalue=NA)
ACD20_25_26

Not on your lists

29660..30454
DNA (795bp) protein (265aa)
prolipoprotein diacylglyceryl transferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=122 to=139)
transmembrane_regions (db=TMHMM db_id=tmhmm from=87 to=109)
seg (db=Seg db_id=seg from=90 to=104)
ACD20_25_27

Not on your lists

30511..30969
DNA (459bp) protein (153aa)
ribonucleotide reductase regulator NrdR-like protein
seg (db=Seg db_id=seg from=26 to=37)
seg (db=Seg db_id=seg from=133 to=144)
seg (db=Seg db_id=seg from=82 to=93)
ACD20_25_28

Not on your lists

30973..32880
DNA (1908bp) protein (636aa)
alpha amylase
alpha amylase
Alpha amylase catalytic region n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUL1_CHLT3 (db=UNIREF evalue=3.0e-135 bit_score=486.0 identity=42.41 coverage=96.6981132075472)
seg (db=Seg db_id=seg from=259 to=274)
ACD20_25_29

Not on your lists

comp(32995..34548)
DNA (1554bp) protein (518aa)
purH; bifunctional purine biosynthesis protein PurH (EC:2.1.2.3 3.5.4.10)
purH; bifunctional purine biosynthesis protein PurH (EC:2.1.2.3 3.5.4.10)
IMP cyclohydrolase n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=PUR9_CALS8 (db=UNIREF evalue=7.0e-138 bit_score=494.0 identity=49.62 coverage=98.4555984555985)
Bifunctional purine biosynthesis protein, PurH type (db=HMMPIR db_id=PIRSF000414 from=1 to=517 evalue=2.0e-255 interpro_id=IPR002695 interpro_description=AICARFT/IMPCHase bienzyme GO=Molecular Function: IMP cyclohydrolase activity (GO:0003937), Molecular Function: phosphoribosylaminoimidazolecarboxamide formyltransferase activity (GO:0004643), Biological Process: purine nucleotide biosynthetic process (GO:0006164))
ACD20_25_30

Not on your lists

comp(34881..35432)
DNA (552bp) protein (184aa)
hypothetical protein
seg (db=Seg db_id=seg from=13 to=24)
DNA_processg_A (db=HMMPfam db_id=PF02481 from=34 to=100 evalue=3.3e-08 interpro_id=IPR003488 interpro_description=DNA recombination-mediator protein A GO=Biological Process: DNA mediated transformation (GO:0009294))
hypothetical protein alias=ACD20_C00025G00030,ACD20_16493.43270.13G0030,ACD20_16493.43270.13_30 id=18406 tax=ACD20 species=Synechococcus sp. PCC 7335 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Displaying items 1-30 of 37 in total

View Taxonomy