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ACD20_27

Alias: ACD20_71162.23698.13

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_27_1

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comp(107..877)
DNA (771bp) protein (257aa)
107..877 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02522.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_27_2
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria

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1034..1330
DNA (297bp) protein (99aa)
1034..1330 + (rbs_motif=AGGA/GGAG/GAGG rbs_spacer=11-12bp)
hypothetical protein Tax=RIFOXYA2_FULL_Melainabacteria_32_9_curated
ACD20_27_3
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria

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1290..1970
DNA (681bp) protein (227aa)
hypothetical protein (db=KEGG evalue=1.0e-08 bit_score=63.2 identity=26.13 coverage=80.6167400881057)
Transposase_11 (db=HMMPfam db_id=PF01609 from=61 to=189 evalue=1.2e-18 interpro_id=IPR002559 interpro_description=Transposase, IS4-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=56 to=196 evalue=4.0e-18 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
hypothetical protein alias=ACD20_71162.23698.13G0003,ACD20_71162.23698.13_3,ACD20_C00027G00003 id=18494 tax=ACD20 species=unknown genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_27_4

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comp(1974..2525)
DNA (552bp) protein (184aa)
seg (db=Seg db_id=seg from=125 to=147)
Uncharacterized protein {ECO:0000313|EMBL:EKE02520.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_27_5

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2720..2944
DNA (225bp) protein (75aa)
2720..2944 + (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02521.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_27_6

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comp(3028..3366)
DNA (339bp) protein (113aa)
3028..3366 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02512.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_27_7

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3998..5140
DNA (1143bp) protein (381aa)
radical SAM protein
seg (db=Seg db_id=seg from=53 to=64)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=61 to=350 evalue=3.2e-33)
Radical_SAM (db=HMMPfam db_id=PF04055 from=68 to=221 evalue=1.1e-13 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
ACD20_27_8

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comp(5354..5713)
DNA (360bp) protein (120aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=75)
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=38)
seg (db=Seg db_id=seg from=108 to=119)
seg (db=Seg db_id=seg from=12 to=26)
ACD20_27_9

Not on your lists

comp(5720..7777)
DNA (2058bp) protein (686aa)
NAD-dependent DNA ligase (EC:6.5.1.2)
NAD-dependent DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Ammonifex degensii KC4 RepID=C9RD93_AMMDK (db=UNIREF evalue=0.0 bit_score=663.0 identity=52.02 coverage=95.7725947521866)
seg (db=Seg db_id=seg from=635 to=648)
ACD20_27_10

Not on your lists

comp(7896..8678)
DNA (783bp) protein (261aa)
TnpA n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0STV0_ACILW (db=UNIREF evalue=9.0e-12 bit_score=73.9 identity=28.28 coverage=85.0574712643678)
transposase (db=KEGG evalue=1.0e-08 bit_score=63.5 identity=26.1 coverage=86.5900383141762)
seg (db=Seg db_id=seg from=7 to=18)
coiled-coil (db=Coil db_id=coil from=159 to=180 evalue=NA)
ACD20_27_11

Not on your lists

comp(8864..9175)
DNA (312bp) protein (104aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKE02517.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_27_12

Not on your lists

9367..10740
DNA (1374bp) protein (458aa)
Orn/Lys/Arg decarboxylase
Orn/Lys/Arg decarboxylase
coiled-coil (db=Coil db_id=coil from=362 to=383 evalue=NA)
coiled-coil (db=Coil db_id=coil from=274 to=302 evalue=NA)
ACD20_27_13

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10903..13068
DNA (2166bp) protein (722aa)
V-type H(+)-translocating pyrophosphatase (EC:3.6.1.1)
V-type H(+)-translocating pyrophosphatase (EC:3.6.1.1)
V-type H(+)-translocating pyrophosphatase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ATG4_PELPD (db=UNIREF evalue=2.0e-174 bit_score=617.0 identity=58.3 coverage=91.5512465373961)
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=199)
membrane bound (10 psort) 14 internal helices kelly wrighton (11/15/12)
ACD20_27_14

Not on your lists

comp(13730..14971)
DNA (1242bp) protein (414aa)
Aluminium resistance family protein n=1 Tax='Nostoc azollae' 0708 RepID=B9YU78_ANAAZ (db=UNIREF evalue=6.0e-134 bit_score=481.0 identity=58.54 coverage=95.8937198067633)
aluminium resistance protein
aluminium resistance protein
Alum_res (db=HMMPfam db_id=PF06838 from=7 to=406 evalue=3.9e-183 interpro_id=IPR009651 interpro_description=Aluminium resistance)
ACD20_27_15

Not on your lists

15123..15821
DNA (699bp) protein (233aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU46_9FIRM (db=UNIREF evalue=2.0e-33 bit_score=145.0 identity=41.94 coverage=87.5536480686695)
coiled-coil (db=Coil db_id=coil from=48 to=83 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
cytoplasmic kelly wrighton (11/15/12)
ACD20_27_16

Not on your lists

15844..17070
DNA (1227bp) protein (409aa)
FAD binding domain.
seg (db=Seg db_id=seg from=19 to=43)
seg (db=Seg db_id=seg from=56 to=69)
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=1 to=160 evalue=2.4e-22)
membrane bound do not think is FR-mis annotation. best blast are not to FR at all (but to FAD dependent oxido reductase), missing other subunits. . kelly wrighton (11/15/12)
ACD20_27_17

Not on your lists

17210..18091
DNA (882bp) protein (294aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=246 to=268)
transmembrane_regions (db=TMHMM db_id=tmhmm from=209 to=231)
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=196)
transmembrane_regions (db=TMHMM db_id=tmhmm from=150 to=172)
8 helices found. membrane bound kelly wrighton (11/15/12)
ACD20_27_18

Not on your lists

18312..18575
DNA (264bp) protein (88aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=85)
Uncharacterized protein {ECO:0000313|EMBL:EKE02509.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_27_19

Not on your lists

18830..19126
DNA (297bp) protein (99aa)
chaperonin Cpn10
10 kDa chaperonin n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z8X0_9BACT (db=UNIREF evalue=5.0e-25 bit_score=116.0 identity=60.0 coverage=94.9494949494949)
seg (db=Seg db_id=seg from=18 to=24)
CHAPERONINS_CPN10 (db=PatternScan db_id=PS00681 from=6 to=30 evalue=0.0 interpro_id=IPR018369 interpro_description=Chaperonin Cpn10, conserved site GO=Molecular Function: ATP binding (GO:0005524), Biological Process: protein folding (GO:0006457))
ACD20_27_20

Not on your lists

19154..20785
DNA (1632bp) protein (544aa)
groEL; chaperonin GroEL
groEL; chaperonin GroEL
60 kDa chaperonin 2 n=1 Tax=Gloeobacter violaceus RepID=CH602_GLOVI (db=UNIREF evalue=0.0 bit_score=702.0 identity=68.18 coverage=96.875)
seg (db=Seg db_id=seg from=372 to=387)
ACD20_27_21

Not on your lists

21277..21672
DNA (396bp) protein (132aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=87 to=109)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
seg (db=Seg db_id=seg from=111 to=124)
Uncharacterized protein {ECO:0000313|EMBL:EKE02500.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_27_22

Not on your lists

21923..22177
DNA (255bp) protein (85aa)
hypothetical protein
HicA protein n=1 Tax=Cyanothece sp. CCY0110 RepID=A3ISD2_9CHRO (db=UNIREF evalue=5.0e-17 bit_score=90.1 identity=54.29 coverage=81.1764705882353)
seg (db=Seg db_id=seg from=3 to=14)
HicA protein {ECO:0000313|EMBL:EKE02501.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_27_23

Not on your lists

22174..22584
DNA (411bp) protein (137aa)
HicB family protein n=2 Tax=Cyanothece RepID=B7JV52_CYAP8 (db=UNIREF evalue=2.0e-34 bit_score=147.0 identity=54.46 coverage=81.021897810219)
HicB family protein
HicB (db=HMMPfam db_id=PF05534 from=55 to=105 evalue=1.4e-15 interpro_id=IPR008651 interpro_description=HicB)
HicB family protein {ECO:0000313|EMBL:EKE02502.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_27_24

Not on your lists

22855..23157
DNA (303bp) protein (101aa)
CxxC-x17-CxxC domain containing protein
coiled-coil (db=Coil db_id=coil from=42 to=63 evalue=NA)
seg (db=Seg db_id=seg from=46 to=62)
Uncharacterized protein {ECO:0000313|EMBL:EKE02503.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_27_25

Not on your lists

23296..23562
DNA (267bp) protein (89aa)
23296..23562 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02504.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 25 items

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