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ACD20_41

Alias: ACD20_18461.24404.14

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_41_1

Not on your lists

comp(151..1053)
DNA (903bp) protein (301aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=265 to=284)
seg (db=Seg db_id=seg from=68 to=87)
seg (db=Seg db_id=seg from=155 to=166)
seg (db=Seg db_id=seg from=239 to=250)
ACD20_41_2

Not on your lists

comp(1037..1849)
DNA (813bp) protein (271aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=228 to=250)
seg (db=Seg db_id=seg from=28 to=38)
seg (db=Seg db_id=seg from=43 to=56)
seg (db=Seg db_id=seg from=228 to=245)
ACD20_41_3

Not on your lists

comp(2190..3509)
DNA (1320bp) protein (440aa)
Enolase n=1 Tax=bacterium S5 RepID=D3C2P4_9BACT (db=UNIREF evalue=3.0e-165 bit_score=585.0 identity=70.28 coverage=95.9090909090909)
eno; enolase (EC:4.2.1.11)
eno; enolase (EC:4.2.1.11)
seg (db=Seg db_id=seg from=118 to=126)
ACD20_41_4

Not on your lists

comp(3524..3790)
DNA (267bp) protein (89aa)
RNA-binding S4 domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRL4_PAESJ (db=UNIREF evalue=4.0e-19 bit_score=96.7 identity=55.68 coverage=96.6292134831461)
RNA-binding S4 domain-containing protein
no description (db=Gene3D db_id=G3DSA:3.10.290.10 from=1 to=88 evalue=1.3e-18)
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=1 to=78 evalue=3.8e-16)
ACD20_41_5

Not on your lists

4357..5322
DNA (966bp) protein (322aa)
Glycosyl transferase, group 2 family protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMI0_9CYAN (db=UNIREF evalue=3.0e-09 bit_score=66.2 identity=27.23 coverage=56.832298136646)
glycosyl transferase family 2 (db=KEGG evalue=3.0e-08 bit_score=63.2 identity=26.15 coverage=57.7639751552795)
seg (db=Seg db_id=seg from=124 to=135)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=4 to=244 evalue=1.0e-22)
ACD20_41_6

Not on your lists

5380..6594
DNA (1215bp) protein (405aa)
dihydropteroate synthase (EC:2.5.1.15)
seg (db=Seg db_id=seg from=349 to=364)
seg (db=Seg db_id=seg from=169 to=180)
DHPS_1 (db=PatternScan db_id=PS00792 from=138 to=153 evalue=0.0 interpro_id=IPR000489 interpro_description=Pterin-binding GO=Biological Process: pteridine and derivative metabolic process (GO:0042558))
ACD20_41_7

Not on your lists

6670..6783
DNA (114bp) protein (38aa)
6670..6783 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04162.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_41_8

Not on your lists

comp(6815..7429)
DNA (615bp) protein (205aa)
coiled-coil (db=Coil db_id=coil from=71 to=92 evalue=NA)
seg (db=Seg db_id=seg from=53 to=68)
Uncharacterized protein {ECO:0000313|EMBL:EKE04163.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_41_9

Not on your lists

7698..8726
DNA (1029bp) protein (343aa)
hypothetical protein
DUF752 (db=HMMPfam db_id=PF05430 from=161 to=280 evalue=1.1e-28 interpro_id=IPR008471 interpro_description=Protein of unknown function DUF752)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=189 to=249 evalue=7.0e-07)
hypothetical protein alias=ACD20_C00041G00009,ACD20_18461.24404.14G0009,ACD20_18461.24404.14_9 id=18870 tax=ACD20 species=Acaryochloris marina genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_41_10

Not on your lists

9088..10119
DNA (1032bp) protein (344aa)
glycosyl transferase family protein
Glycosyl transferase, family 2 n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YLN1_9CYAN (db=UNIREF evalue=2.0e-29 bit_score=133.0 identity=31.51 coverage=66.2790697674419)
seg (db=Seg db_id=seg from=154 to=164)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=3 to=216 evalue=1.5e-58)
ACD20_41_11

Not on your lists

comp(10116..10751)
DNA (636bp) protein (212aa)
CoA-binding domain protein
seg (db=Seg db_id=seg from=196 to=205)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=76 to=206 evalue=1.6e-36 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: binding (GO:0005488), Biological Process: metabolic process (GO:0008152))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=80 to=207 evalue=9.3e-27)
ACD20_41_12

Not on your lists

comp(10847..12613)
DNA (1767bp) protein (589aa)
NADH dehydrogenase I subunit G (EC:1.6.5.3)
NADH dehydrogenase I subunit G (EC:1.6.5.3)
NADH dehydrogenase I subunit G n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0X4_HALOH (db=UNIREF evalue=0.0 bit_score=676.0 identity=56.01 coverage=98.471986417657)
seg (db=Seg db_id=seg from=505 to=517)
Catlytic subunit Fe hydrogenase. Cytoplasmic L1, L2, L3 motifs confirmed (one variant residue in L3) kelly wrighton (11/15/12)
ACD20_41_13

Not on your lists

comp(12641..14491)
DNA (1851bp) protein (617aa)
NADH dehydrogenase I subunit F (EC:1.6.5.3)
NADH dehydrogenase I subunit F (EC:1.6.5.3)
NADH dehydrogenase I subunit F n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0X3_HALOH (db=UNIREF evalue=0.0 bit_score=776.0 identity=64.96 coverage=96.4343598055105)
Was annotated as NADH quinone reductase. Changed by KW kelly wrighton (11/15/12)
ACD20_41_14

Not on your lists

comp(14505..15017)
DNA (513bp) protein (171aa)
NADH dehydrogenase I subunit E (EC:1.6.5.3)
COMPLEX1_24K (db=PatternScan db_id=PS01099 from=124 to=142 evalue=0.0 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD or NADH binding (GO:0051287), Biological Process: oxidation reduction (GO:0055114))
Complex1_24kDa (db=HMMPfam db_id=PF01257 from=22 to=167 evalue=3.5e-50 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD or NADH binding (GO:0051287), Biological Process: oxidation reduction (GO:0055114))
cytoplasmic membrane likely. 6.29 psortb originally annotated as NADH complex I. KW changed based on synteny. kelly wrighton (11/15/12)
ACD20_41_15

Not on your lists

15309..15581
DNA (273bp) protein (91aa)
seg (db=Seg db_id=seg from=45 to=56)
Uncharacterized protein {ECO:0000313|EMBL:EKE04170.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_41_16

Not on your lists

15763..16710
DNA (948bp) protein (316aa)
glycosyl transferase family protein
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=4 to=244 evalue=1.9e-68)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=4 to=230 evalue=1.4e-66)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR22916 from=12 to=312 evalue=4.0e-40)
ACD20_41_17

Not on your lists

16741..17787
DNA (1047bp) protein (349aa)
glycosyl transferase family protein
seg (db=Seg db_id=seg from=236 to=247)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=3 to=220 evalue=5.8e-57)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=3 to=249 evalue=4.4e-56)
ACD20_41_18

Not on your lists

18134..19828
DNA (1695bp) protein (565aa)
seg (db=Seg db_id=seg from=324 to=337)
seg (db=Seg db_id=seg from=150 to=163)
seg (db=Seg db_id=seg from=128 to=139)
seg (db=Seg db_id=seg from=97 to=123)
ACD20_41_19

Not on your lists

19840..21840
DNA (2001bp) protein (667aa)
type II secretion system protein E
type II secretion system protein E
Pilus assembly protein n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DMJ4_THEEB (db=UNIREF evalue=7.0e-141 bit_score=504.0 identity=45.43 coverage=88.455772113943)
seg (db=Seg db_id=seg from=562 to=576)
ACD20_41_20

Not on your lists

21863..22945
DNA (1083bp) protein (361aa)
Twitching motility protein n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DMJ5_THEEB (db=UNIREF evalue=2.0e-142 bit_score=509.0 identity=67.6 coverage=98.8919667590028)
pilT-1; pilin retraction protein PilT
pilT-1; pilin retraction protein PilT
T2SP_E (db=PatternScan db_id=PS00662 from=193 to=207 evalue=0.0 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
ACD20_41_21

Not on your lists

23036..24268
DNA (1233bp) protein (411aa)
Type II secretion system protein n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HLD7_CYAP4 (db=UNIREF evalue=6.0e-112 bit_score=407.0 identity=49.03 coverage=98.5401459854015)
Type II secretion system F domain protein
Type II secretion system F domain protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=174 to=196)
Displaying 21 items

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