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ACD20_44

Alias: ACD20_83.33323.14

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_44_1

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comp(294..1493)
DNA (1200bp) protein (400aa)
hypothetical protein (db=KEGG evalue=2.0e-17 bit_score=93.6 identity=23.9 coverage=77.0)
hypothetical protein alias=ACD20_C00044G00001,ACD20_83.33323.14G0001,ACD20_83.33323.14_1 id=18930 tax=ACD20 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE02371.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_44_2

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1612..3480
DNA (1869bp) protein (623aa)
osc; hypothetical protein (EC:5.4.99.7) (db=KEGG evalue=1.0e-16 bit_score=92.0 identity=28.48 coverage=44.1412520064205)
Uncharacterized protein {ECO:0000313|EMBL:EKE02372.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
osc; hypothetical protein (EC:5.4.99.7) alias=ACD20_C00044G00002,ACD20_83.33323.14G0002,ACD20_83.33323.14_2 id=18935 tax=ACD20 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_44_3

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3916..4983
DNA (1068bp) protein (356aa)
recA protein
recA protein
Protein recA n=2 Tax=Clostridium RepID=B8I7D2_CLOCE (db=UNIREF evalue=3.0e-121 bit_score=438.0 identity=67.96 coverage=92.9775280898876)
seg (db=Seg db_id=seg from=256 to=264)
ACD20_44_4

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5275..6888
DNA (1614bp) protein (538aa)
metal dependent phosphohydrolase
metal dependent phosphohydrolase
RNA binding metal dependent phosphohydrolase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RMB7_CLOCL (db=UNIREF evalue=2.0e-136 bit_score=489.0 identity=59.66 coverage=88.1040892193308)
coiled-coil (db=Coil db_id=coil from=177 to=202 evalue=NA)
ACD20_44_5

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6888..7709
DNA (822bp) protein (274aa)
hypothetical protein
Metallophosphoesterase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA4_BACS4 (db=UNIREF evalue=3.0e-65 bit_score=251.0 identity=49.06 coverage=93.7956204379562)
no description (db=Gene3D db_id=G3DSA:3.60.21.30 from=4 to=266 evalue=1.3e-83)
TIGR00282: metallophosphoesterase, MG_246/B (db=HMMTigr db_id=TIGR00282 from=4 to=273 evalue=1.2e-81 interpro_id=IPR005235 interpro_description=Conserved hypothetical protein CHP00282)
ACD20_44_6

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7728..8591
DNA (864bp) protein (288aa)
putative metal-dependent phosphoesterase, PHP family
PHP domain-like (db=superfamily db_id=SSF89550 from=1 to=253 evalue=8.6e-41 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
PHP (db=HMMPfam db_id=PF02811 from=4 to=198 evalue=8.6e-20 interpro_id=IPR004013 interpro_description=PHP, C-terminal GO=Molecular Function: catalytic activity (GO:0003824))
no description (db=HMMSmart db_id=SM00481 from=3 to=75 evalue=4.9e-19 interpro_id=IPR003141 interpro_description=Polymerase/histidinol phosphatase, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260))
ACD20_44_7

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8769..9383
DNA (615bp) protein (205aa)
thymidine kinase (EC:2.7.1.21)
seg (db=Seg db_id=seg from=66 to=85)
Thymidine kinase (db=HMMPIR db_id=PIRSF035805 from=3 to=195 evalue=1.5e-65 interpro_id=IPR001267 interpro_description=Thymidine kinase GO=Molecular Function: thymidine kinase activity (GO:0004797), Molecular Function: ATP binding (GO:0005524))
TK (db=HMMPfam db_id=PF00265 from=6 to=184 evalue=7.0e-44 interpro_id=IPR001267 interpro_description=Thymidine kinase GO=Molecular Function: thymidine kinase activity (GO:0004797), Molecular Function: ATP binding (GO:0005524))
ACD20_44_8

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comp(9462..10157)
DNA (696bp) protein (232aa)
hypothetical protein
no description (db=Gene3D db_id=G3DSA:3.40.50.880 from=1 to=231 evalue=5.1e-55)
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=14 to=231 evalue=2.0e-39)
GATase (db=HMMPfam db_id=PF00117 from=18 to=192 evalue=1.1e-19 interpro_id=IPR000991 interpro_description=Glutamine amidotransferase class-I, C-terminal GO=Molecular Function: catalytic activity (GO:0003824))
ACD20_44_9

Not on your lists

comp(10241..10579)
DNA (339bp) protein (113aa)
glnB; Nitrogen regulatory protein PII
PII_GLNB_CTER (db=PatternScan db_id=PS00638 from=83 to=96 evalue=0.0 interpro_id=IPR017918 interpro_description=Nitrogen regulatory protein PII, conserved site GO=Biological Process: regulation of nitrogen utilization (GO:0006808), Molecular Function: enzyme regulator activity (GO:0030234))
GlnB-like (db=superfamily db_id=SSF54913 from=1 to=112 evalue=1.9e-43 interpro_id=IPR011322 interpro_description=Nitrogen regulatory PII-like, alpha/beta)
PIIGLNB (db=FPrintScan db_id=PR00340 from=2 to=17 evalue=3.3e-41 interpro_id=IPR002187 interpro_description=Nitrogen regulatory protein PII GO=Biological Process: regulation of nitrogen utilization (GO:0006808), Molecular Function: enzyme regulator activity (GO:0030234))
ACD20_44_10

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comp(10829..12265)
DNA (1437bp) protein (479aa)
ammonium transporter
ammonium transporter
Ammonium transporter n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG73_SYNFM (db=UNIREF evalue=6.0e-149 bit_score=531.0 identity=68.46 coverage=85.1774530271399)
transmembrane_regions (db=TMHMM db_id=tmhmm from=386 to=408)
ACD20_44_11

Not on your lists

comp(12465..13838)
DNA (1374bp) protein (458aa)
porin type major outer membrane protein (db=KEGG evalue=3.0e-08 bit_score=63.9 identity=29.17 coverage=38.2096069868996)
seg (db=Seg db_id=seg from=333 to=345)
coiled-coil (db=Coil db_id=coil from=116 to=151 evalue=NA)
Porins (db=superfamily db_id=SSF56935 from=162 to=457 evalue=3.5e-17)
ACD20_44_12

Not on your lists

comp(14385..16388)
DNA (2004bp) protein (668aa)
seg (db=Seg db_id=seg from=626 to=643)
seg (db=Seg db_id=seg from=606 to=619)
seg (db=Seg db_id=seg from=503 to=512)
seg (db=Seg db_id=seg from=570 to=590)
ACD20_44_13

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comp(16441..16902)
DNA (462bp) protein (154aa)
16441..16902 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02383.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_44_14

Not on your lists

17085..18635
DNA (1551bp) protein (517aa)
Mg chelatase-related protein
Mg chelatase-related protein
Mg chelatase, subunit ChlI n=8 Tax=Thermoanaerobacter RepID=B0K9W1_THEP3 (db=UNIREF evalue=2.0e-159 bit_score=566.0 identity=54.1 coverage=97.2920696324952)
seg (db=Seg db_id=seg from=241 to=255)
ACD20_44_15

Not on your lists

comp(18874..19986)
DNA (1113bp) protein (371aa)
seg (db=Seg db_id=seg from=348 to=363)
seg (db=Seg db_id=seg from=235 to=245)
seg (db=Seg db_id=seg from=101 to=112)
Uncharacterized protein {ECO:0000313|EMBL:EKE02385.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_44_16

Not on your lists

comp(20108..20863)
DNA (756bp) protein (252aa)
protein of unknown function DUF561
seg (db=Seg db_id=seg from=208 to=218)
DUF561 (db=HMMPfam db_id=PF04481 from=6 to=241 evalue=1.2e-68 interpro_id=IPR007570 interpro_description=Protein of unknown function DUF561)
Aldolase (db=superfamily db_id=SSF51569 from=12 to=224 evalue=1.7e-17)
ACD20_44_17

Not on your lists

21061..21513
DNA (453bp) protein (151aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=115 to=136 evalue=NA)
all-alpha NTP pyrophosphatases (db=superfamily db_id=SSF101386 from=2 to=79 evalue=3.0e-07)
hypothetical protein alias=ACD20_C00044G00017,ACD20_83.33323.14G0017,ACD20_83.33323.14_17 id=18934 tax=ACD20 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_44_18

Not on your lists

21491..22222
DNA (732bp) protein (244aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
seg (db=Seg db_id=seg from=152 to=162)
PSI_RSU (db=PatternScan db_id=PS01149 from=102 to=116 evalue=0.0 interpro_id=IPR018496 interpro_description=Pseudouridine synthase, RsuA and RluB/E/F, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866))
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600 from=9 to=234 evalue=7.4e-67)
ACD20_44_19

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comp(22224..24389)
DNA (2166bp) protein (722aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=423 to=440)
transmembrane_regions (db=TMHMM db_id=tmhmm from=453 to=475)
transmembrane_regions (db=TMHMM db_id=tmhmm from=480 to=497)
ACD20_44_20

Not on your lists

comp(24468..24674)
DNA (207bp) protein (69aa)
seg (db=Seg db_id=seg from=47 to=65)
CxxC_CxxC_SSSS (db=HMMPfam db_id=PF09723 from=1 to=41 evalue=1.1e-14 interpro_id=IPR013429 interpro_description=Regulatory protein, FmdB, putative)
CxxC_CxxC_SSSS: putative regulatory pr (db=HMMTigr db_id=TIGR02605 from=1 to=50 evalue=3.3e-13 interpro_id=IPR013429 interpro_description=Regulatory protein, FmdB, putative)
no description (db=HMMSmart db_id=SM00834 from=1 to=42 evalue=1.1e-10 interpro_id=IPR013429 interpro_description=Regulatory protein, FmdB, putative)
ACD20_44_21

Not on your lists

comp(24694..26067)
DNA (1374bp) protein (458aa)
zinc protease
transmembrane_regions (db=TMHMM db_id=tmhmm from=381 to=403)
transmembrane_regions (db=TMHMM db_id=tmhmm from=96 to=118)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD20_44_22

Not on your lists

comp(26170..27315)
DNA (1146bp) protein (382aa)
metal-dependent enzyme-like protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=199)
transmembrane_regions (db=TMHMM db_id=tmhmm from=355 to=377)
transmembrane_regions (db=TMHMM db_id=tmhmm from=287 to=305)
ACD20_44_23

Not on your lists

27417..28076
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YSZ4_9CYAN (db=UNIREF evalue=2.0e-28 bit_score=129.0 identity=32.38 coverage=90.9090909090909)
hypothetical protein
PRTase-like (db=superfamily db_id=SSF53271 from=53 to=209 evalue=4.0e-17)
Uncharacterized protein {ECO:0000313|EMBL:EKE02393.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_44_24

Not on your lists

28194..29237
DNA (1044bp) protein (348aa)
gcp; DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57)
gcp; DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57)
Probable O-sialoglycoprotein endopeptidase n=1 Tax=Clostridium tetani RepID=GCP_CLOTE (db=UNIREF evalue=9.0e-80 bit_score=300.0 identity=54.72 coverage=89.0804597701149)
seg (db=Seg db_id=seg from=101 to=118)
ACD20_44_25

Not on your lists

29755..30552
DNA (798bp) protein (266aa)
nitrogenase cofactor biosynthesis protein NifB
MOAA_NIFB_PQQE (db=PatternScan db_id=PS01305 from=26 to=37 evalue=0.0 interpro_id=IPR000385 interpro_description=MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: metal ion binding (GO:0046872), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=19 to=248 evalue=3.0e-34)
Radical_SAM (db=HMMPfam db_id=PF04055 from=27 to=195 evalue=1.5e-16 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
ACD20_44_26

Not on your lists

30795..33230
DNA (2436bp) protein (812aa)
single-stranded-DNA-specific exonuclease RecJ
single-stranded-DNA-specific exonuclease RecJ
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2G7_DESRM (db=UNIREF evalue=8.0e-111 bit_score=405.0 identity=41.58 coverage=67.3645320197044)
seg (db=Seg db_id=seg from=670 to=682)
Displaying 26 items

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