ggKbase home page

ACD20_45

Alias: ACD20_34658.28158.14

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_45_1

Not on your lists

212..631
DNA (420bp) protein (140aa)
transcriptional regulator, MarR family
MarR family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XJW9_DESMR (db=UNIREF evalue=2.0e-17 bit_score=90.9 identity=33.33 coverage=97.8571428571428)
seg (db=Seg db_id=seg from=80 to=89)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=139 evalue=1.4e-31)
ACD20_45_2

Not on your lists

654..2015
DNA (1362bp) protein (454aa)
outer membrane efflux protein
seg (db=Seg db_id=seg from=2 to=17)
coiled-coil (db=Coil db_id=coil from=154 to=182 evalue=NA)
coiled-coil (db=Coil db_id=coil from=327 to=348 evalue=NA)
ACD20_45_3

Not on your lists

2002..3090
DNA (1089bp) protein (363aa)
RND family efflux transporter MFP subunit
HlyD family secretion protein n=1 Tax=Methylococcus capsulatus RepID=Q605Z0_METCA (db=UNIREF evalue=1.0e-45 bit_score=187.0 identity=33.54 coverage=84.5730027548209)
coiled-coil (db=Coil db_id=coil from=106 to=127 evalue=NA)
RND_mfp: efflux transporter, RND family, MFP (db=HMMTigr db_id=TIGR01730 from=41 to=361 evalue=1.5e-74 interpro_id=IPR006143 interpro_description=Secretion protein HlyD GO=Molecular Function: protein transporter activity (GO:0008565), Biological Process: protein secretion (GO:0009306), Cellular Component: membrane (GO:0016020))
ACD20_45_4

Not on your lists

3077..6187
DNA (3111bp) protein (1037aa)
acriflavin resistance protein
acriflavin resistance protein
Putative acriflavin resistance protein D n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MDJ2_PARUW (db=UNIREF evalue=0.0 bit_score=796.0 identity=43.88 coverage=98.3606557377049)
transmembrane_regions (db=TMHMM db_id=tmhmm from=386 to=408)
ACD20_45_5

Not on your lists

comp(6259..6771)
DNA (513bp) protein (171aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=124)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=102 to=126)
Uncharacterized protein {ECO:0000313|EMBL:EKE03311.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_45_6

Not on your lists

comp(6778..8412)
DNA (1635bp) protein (545aa)
rne; ribonuclease E
seg (db=Seg db_id=seg from=309 to=327)
seg (db=Seg db_id=seg from=208 to=219)
seg (db=Seg db_id=seg from=226 to=237)
ACD20_45_7

Not on your lists

comp(8842..11433)
DNA (2592bp) protein (864aa)
UPI0001D5AC8D related cluster n=1 Tax=unknown RepID=UPI0001D5AC8D (db=UNIREF evalue=1.0e-163 bit_score=580.0 identity=46.73 coverage=71.6435185185185)
radical SAM protein
radical SAM protein
coiled-coil (db=Coil db_id=coil from=426 to=447 evalue=NA)
ACD20_45_8

Not on your lists

comp(11589..11936)
DNA (348bp) protein (116aa)
11589..11936 - (rbs_motif=GGA/GAG/AGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03303.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_45_9

Not on your lists

comp(12079..13242)
DNA (1164bp) protein (388aa)
diguanylate cyclase domain-containing protein
seg (db=Seg db_id=seg from=6 to=17)
seg (db=Seg db_id=seg from=104 to=124)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=192 to=367 evalue=6.2e-26)
ACD20_45_10

Not on your lists


comp(13412..16066)
DNA (2655bp) protein (885aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanyl-tRNA synthetase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=SYA_DESRM (db=UNIREF evalue=0.0 bit_score=817.0 identity=46.81 coverage=97.9661016949153)
seg (db=Seg db_id=seg from=166 to=178)
ACD20_45_11

Not on your lists

16249..16962
DNA (714bp) protein (238aa)
undecaprenyl-phosphate galactose phosphotransferase (EC:2.7.8.6)
transmembrane_regions (db=TMHMM db_id=tmhmm from=215 to=235)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=56)
Bac_transf (db=HMMPfam db_id=PF02397 from=30 to=216 evalue=1.7e-57 interpro_id=IPR003362 interpro_description=Bacterial sugar transferase)
ACD20_45_12

Not on your lists

17225..17758
DNA (534bp) protein (178aa)
rimI; ribosomal-protein-alanine acetyltransferase (EC:2.3.1.128)
rimI: ribosomal-protein-alanine acetyltransf (db=HMMTigr db_id=TIGR01575 from=13 to=146 evalue=3.3e-47 interpro_id=IPR006464 interpro_description=Ribosomal-protein-alanine acetyltransferase GO=Biological Process: N-terminal protein amino acid acetylation (GO:0006474), Molecular Function: acetyltransferase activity (GO:0016407))
RIBOSOMAL-PROTEIN-ALANINE ACETYLTRANSFERASE (db=HMMPanther db_id=PTHR23091:SF1 from=9 to=149 evalue=3.5e-43)
N-TERMINAL ACETYLTRANSFERASE (db=HMMPanther db_id=PTHR23091 from=9 to=149 evalue=3.5e-43)
ACD20_45_13

Not on your lists

17891..18571
DNA (681bp) protein (227aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=159 to=181)
transmembrane_regions (db=TMHMM db_id=tmhmm from=127 to=146)
seg (db=Seg db_id=seg from=209 to=220)
ACD20_45_14

Not on your lists

comp(18613..18933)
DNA (321bp) protein (107aa)
18613..18933 - (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03296.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_45_15

Not on your lists

comp(18963..19886)
DNA (924bp) protein (308aa)
alpha-L-glutamate ligase
RimK (db=HMMPfam db_id=PF08443 from=101 to=298 evalue=3.6e-17 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=92 to=305 evalue=2.2e-16)
RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN (db=HMMPanther db_id=PTHR21621 from=1 to=300 evalue=4.6e-13)
ACD20_45_16

Not on your lists

comp(20041..21363)
DNA (1323bp) protein (441aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase miaB n=6 Tax=Geobacillus RepID=MIAB_GEOTN (db=UNIREF evalue=1.0e-117 bit_score=426.0 identity=48.75 coverage=98.6394557823129)
(dimethylallyl)adenosine tRNA methylthiotransferase
(dimethylallyl)adenosine tRNA methylthiotransferase
coiled-coil (db=Coil db_id=coil from=208 to=229 evalue=NA)
ACD20_45_17

Not on your lists

21671..21949
DNA (279bp) protein (93aa)
acylphosphatase
ACYLPHOSPHATASE_2 (db=PatternScan db_id=PS00151 from=34 to=50 evalue=0.0 interpro_id=IPR017968 interpro_description=Acylphosphatase, conserved site)
Acylphosphatase (db=HMMPfam db_id=PF00708 from=1 to=91 evalue=2.7e-30 interpro_id=IPR001792 interpro_description=Acylphosphatase-like)
Acylphosphatase/BLUF domain-like (db=superfamily db_id=SSF54975 from=2 to=92 evalue=3.3e-30 interpro_id=IPR001792 interpro_description=Acylphosphatase-like)
ACD20_45_18

Not on your lists

21961..22503
DNA (543bp) protein (181aa)
21961..22503 + (rbs_motif=3Base/5BMM rbs_spacer=13-15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03300.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_45_19

Not on your lists

22532..23512
DNA (981bp) protein (327aa)
trxB; Thioredoxin reductase (EC:1.8.1.9)
Thioredoxin reductase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FVB6_9FIRM (db=UNIREF evalue=2.0e-74 bit_score=283.0 identity=50.17 coverage=91.4373088685015)
seg (db=Seg db_id=seg from=153 to=167)
seg (db=Seg db_id=seg from=294 to=306)
membrane bound likely psort kelly wrighton (11/15/12)
ACD20_45_20

Not on your lists

comp(23614..24048)
DNA (435bp) protein (145aa)
CBS domain containing protein n=3 Tax=Geobacillus RepID=C5D5Y8_GEOSW (db=UNIREF evalue=2.0e-27 bit_score=124.0 identity=47.1 coverage=93.1034482758621)
hypothetical protein
seg (db=Seg db_id=seg from=83 to=94)
INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11911 from=1 to=143 evalue=4.2e-29)
ACD20_45_21

Not on your lists

comp(24072..24260)
DNA (189bp) protein (63aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUC0_9CLOT (db=UNIREF evalue=1.0e-08 bit_score=62.0 identity=45.9 coverage=95.2380952380952)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=10 to=21 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4Fe-4S ferredoxins (db=superfamily db_id=SSF54862 from=1 to=61 evalue=9.8e-12)
no description (db=Gene3D db_id=G3DSA:3.30.70.20 from=1 to=61 evalue=3.7e-11)
ACD20_45_22

Not on your lists

24774..26618
DNA (1845bp) protein (615aa)
Hemolysins and related proteins containing CBS domains
seg (db=Seg db_id=seg from=321 to=336)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=87)
ACD20_45_23

Not on your lists

26828..27721
DNA (894bp) protein (298aa)
GTP-binding protein Era
seg (db=Seg db_id=seg from=270 to=281)
era: GTP-binding protein Era (db=HMMTigr db_id=TIGR00436 from=6 to=278 evalue=2.0e-90 interpro_id=IPR005662 interpro_description=GTP-binding protein Era GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: GTP binding (GO:0005525), Cellular Component: intracellular (GO:0005622))
GTP-BINDING PROTEIN ERA (db=HMMPanther db_id=PTHR11649:SF3 from=1 to=287 evalue=1.6e-78)
ACD20_45_24

Not on your lists

27819..27998
DNA (180bp) protein (60aa)
27819..27998 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03292.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_45_25

Not on your lists

28075..28194
DNA (120bp) protein (40aa)
28075..28194 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03293.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 25 items

View Taxonomy