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ACD20_52

Alias: ACD20_94582.12496.13

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_52_1

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87..821
DNA (735bp) protein (245aa)
transposase
seg (db=Seg db_id=seg from=118 to=127)
Transposase_20 (db=HMMPfam db_id=PF02371 from=134 to=214 evalue=1.1e-14 interpro_id=IPR003346 interpro_description=Transposase, IS116/IS110/IS902 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
Transposase_9 (db=HMMPfam db_id=PF01548 from=2 to=74 evalue=2.2e-08 interpro_id=IPR002525 interpro_description=Transposase, IS111A/IS1328/IS1533, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
ACD20_52_2

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comp(883..1614)
DNA (732bp) protein (244aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
Pili subunits (db=superfamily db_id=SSF54523 from=12 to=67 evalue=3.1e-12)
BCTERIALGSPG (db=FPrintScan db_id=PR00813 from=48 to=66 evalue=5.3e-07 interpro_id=IPR000983 interpro_description=Bacterial general secretion pathway protein G GO=Molecular Function: protein transporter activity (GO:0008565), Cellular Component: type II protein secretion system complex (GO:0015627), Biological Process: protein secretion by the type II secretion system (GO:0015628))
BCTERIALGSPG (db=FPrintScan db_id=PR00813 from=11 to=36 evalue=5.3e-07 interpro_id=IPR000983 interpro_description=Bacterial general secretion pathway protein G GO=Molecular Function: protein transporter activity (GO:0008565), Cellular Component: type II protein secretion system complex (GO:0015627), Biological Process: protein secretion by the type II secretion system (GO:0015628))
ACD20_52_3

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comp(1678..2946)
DNA (1269bp) protein (423aa)
serS; seryl-tRNA ligase SerS (EC:6.1.1.11)
serS; seryl-tRNA ligase SerS (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L208_9BACT (db=UNIREF evalue=4.0e-143 bit_score=511.0 identity=58.61 coverage=98.5815602836879)
seg (db=Seg db_id=seg from=26 to=34)
ACD20_52_4

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3078..3965
DNA (888bp) protein (296aa)
tyrosine recombinase XerD
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=116 to=290 evalue=2.1e-50 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=111 to=289 evalue=5.2e-50 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
Phage_integrase (db=HMMPfam db_id=PF00589 from=117 to=283 evalue=5.2e-44 interpro_id=IPR002104 interpro_description=Integrase, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
ACD20_52_5

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4110..4418
DNA (309bp) protein (103aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=66 to=78)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=25 evalue=6.0)
Uncharacterized protein {ECO:0000313|EMBL:EKE02137.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_52_6

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4595..4951
DNA (357bp) protein (119aa)
predicted transcriptional regulator; K07737 putative transcriptional regulator (db=KEGG evalue=1.0e-09 bit_score=65.5 identity=35.16 coverage=71.4285714285714)
Pencillinase_R (db=HMMPfam db_id=PF03965 from=6 to=105 evalue=1.8e-19 interpro_id=IPR005650 interpro_description=Penicillinase repressor GO=Molecular Function: DNA binding (GO:0003677), Biological Process: negative regulation of transcription (GO:0016481), Molecular Function: specific transcriptional repressor activity (GO:0016566))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=2 to=111 evalue=8.4e-13)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=3 to=81 evalue=3.7e-08 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ACD20_52_7

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5254..5631
DNA (378bp) protein (126aa)
5254..5631 + (rbs_motif=GGA/GAG/AGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02128.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_52_8

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5690..6250
DNA (561bp) protein (187aa)
seg (db=Seg db_id=seg from=105 to=117)
seg (db=Seg db_id=seg from=23 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
TadE (db=HMMPfam db_id=PF07811 from=17 to=56 evalue=5.0e-09 interpro_id=IPR012495 interpro_description=TadE-like)
ACD20_52_9

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6259..6876
DNA (618bp) protein (206aa)
coiled-coil (db=Coil db_id=coil from=58 to=79 evalue=NA)
coiled-coil (db=Coil db_id=coil from=134 to=162 evalue=NA)
seg (db=Seg db_id=seg from=59 to=75)
UPF0153 (db=HMMPfam db_id=PF03692 from=14 to=128 evalue=5.4e-07 interpro_id=IPR005358 interpro_description=Uncharacterised protein family UPF0153)
ACD20_52_10

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7238..9682
DNA (2445bp) protein (815aa)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=2 Tax=Geobacter RepID=A5GDX4_GEOUR (db=UNIREF evalue=0.0 bit_score=737.0 identity=52.77 coverage=96.8098159509202)
seg (db=Seg db_id=seg from=276 to=287)
ACD20_52_11

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comp(9765..10289)
DNA (525bp) protein (175aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
Uncharacterized protein {ECO:0000313|EMBL:EKE02132.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_52_12

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comp(10495..11400)
DNA (906bp) protein (302aa)
coiled-coil (db=Coil db_id=coil from=19 to=40 evalue=NA)
seg (db=Seg db_id=seg from=46 to=62)
seg (db=Seg db_id=seg from=75 to=107)
seg (db=Seg db_id=seg from=261 to=277)
ACD20_52_13

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comp(11629..11835)
DNA (207bp) protein (69aa)
coiled-coil (db=Coil db_id=coil from=19 to=40 evalue=NA)
seg (db=Seg db_id=seg from=41 to=61)
Uncharacterized protein {ECO:0000313|EMBL:EKE02126.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_52_14

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comp(12243..12533)
DNA (291bp) protein (97aa)
seg (db=Seg db_id=seg from=23 to=50)
Uncharacterized protein {ECO:0000313|EMBL:EKE02125.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 14 items

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