ggKbase home page

ACD20_61

Alias: ACD20_5553.6893.14

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_61_1

Not on your lists

comp(307..1080)
DNA (774bp) protein (258aa)
xylose isomerase domain-containing protein
Xylose isomerase domain protein TIM barrel n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5R0N8_9FIRM (db=UNIREF evalue=1.0e-24 bit_score=116.0 identity=34.93 coverage=77.9069767441861)
seg (db=Seg db_id=seg from=37 to=49)
Xylose isomerase-like (db=superfamily db_id=SSF51658 from=1 to=257 evalue=9.2e-35 interpro_id=IPR013022 interpro_description=Xylose isomerase-like, TIM barrel domain)
ACD20_61_2

Not on your lists

comp(2014..2868)
DNA (855bp) protein (285aa)
class IV aminotransferase
Aminotransferase class IV n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCY2_9FIRM (db=UNIREF evalue=1.0e-29 bit_score=133.0 identity=33.89 coverage=81.7543859649123)
seg (db=Seg db_id=seg from=72 to=84)
AA_TRANSFER_CLASS_4 (db=PatternScan db_id=PS00770 from=183 to=213 evalue=0.0 interpro_id=IPR018300 interpro_description=Aminotransferase, class IV, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD20_61_3

Not on your lists

comp(2971..3549)
DNA (579bp) protein (193aa)
hypothetical protein
LigT-like (db=superfamily db_id=SSF55144 from=10 to=192 evalue=4.9e-28 interpro_id=IPR009097 interpro_description=RNA ligase/cyclic nucleotide phosphodiesterase GO=Molecular Function: catalytic activity (GO:0003824), Cellular Component: intracellular (GO:0005622), Biological Process: RNA metabolic process (GO:0016070))
no description (db=Gene3D db_id=G3DSA:3.90.1140.10 from=10 to=192 evalue=5.1e-28)
2_5_ligase: 2'-5' RNA ligase (db=HMMTigr db_id=TIGR02258 from=10 to=192 evalue=1.2e-23 interpro_id=IPR004175 interpro_description=2',5' RNA ligase GO=Molecular Function: 2'-5'-RNA ligase activity (GO:0008664), Biological Process: RNA metabolic process (GO:0016070))
ACD20_61_4

Not on your lists

comp(3836..4099)
DNA (264bp) protein (88aa)
coiled-coil (db=Coil db_id=coil from=44 to=65 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=6 to=25)
seg (db=Seg db_id=seg from=3 to=24)
Uncharacterized protein {ECO:0000313|EMBL:EKE02835.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_61_5

Not on your lists

comp(4122..4514)
DNA (393bp) protein (131aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=15 to=27)
seg (db=Seg db_id=seg from=30 to=49)
seg (db=Seg db_id=seg from=66 to=78)
ACD20_61_6

Not on your lists

comp(4525..4839)
DNA (315bp) protein (105aa)
seg (db=Seg db_id=seg from=77 to=93)
seg (db=Seg db_id=seg from=7 to=30)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKE02837.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_61_7

Not on your lists

comp(4959..5351)
DNA (393bp) protein (131aa)
seg (db=Seg db_id=seg from=93 to=104)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
Uncharacterized protein {ECO:0000313|EMBL:EKE02838.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_61_8

Not on your lists

5516..6883
DNA (1368bp) protein (456aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCL8_THET1 (db=UNIREF evalue=6.0e-91 bit_score=338.0 identity=39.42 coverage=96.2719298245614)
DUF1727 (db=HMMPfam db_id=PF08353 from=335 to=445 evalue=6.0e-40 interpro_id=IPR013564 interpro_description=Domain of unknown function DUF1727)
Displaying 8 items

View Taxonomy