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ACD20_63

Alias: ACD20_2753.17987.14

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_63_1

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141..593
DNA (453bp) protein (151aa)
hypothetical protein
CBS domain containing membrane protein n=1 Tax=Geobacter sp. M18 RepID=C6MN16_9DELT (db=UNIREF evalue=9.0e-12 bit_score=72.4 identity=33.56 coverage=89.4039735099338)
seg (db=Seg db_id=seg from=43 to=54)
INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11911 from=5 to=147 evalue=7.5e-22)
ACD20_63_2

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694..1545
DNA (852bp) protein (284aa)
seg (db=Seg db_id=seg from=246 to=257)
seg (db=Seg db_id=seg from=104 to=122)
seg (db=Seg db_id=seg from=24 to=36)
transmembrane_regions (db=TMHMM db_id=tmhmm from=243 to=265)
ACD20_63_3

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1493..2422
DNA (930bp) protein (310aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
miaA: tRNA delta(2)-isopentenylpyrophosphate (db=HMMTigr db_id=TIGR00174 from=7 to=292 evalue=1.2e-112 interpro_id=IPR018022 interpro_description=tRNA delta(2)-isopentenylpyrophosphate transferase)
IPPT (db=HMMPfam db_id=PF01715 from=41 to=287 evalue=1.3e-80 interpro_id=IPR002627 interpro_description=tRNA isopentenyltransferase GO=Molecular Function: tRNA isopentenyltransferase activity (GO:0004811), Molecular Function: ATP binding (GO:0005524), Biological Process: tRNA processing (GO:0008033))
TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE (db=HMMPanther db_id=PTHR11088:SF21 from=38 to=292 evalue=2.3e-76)
ACD20_63_4

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2409..4292
DNA (1884bp) protein (628aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZDY6_NODSP (db=UNIREF evalue=0.0 bit_score=760.0 identity=59.16 coverage=97.9299363057325)
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
coiled-coil (db=Coil db_id=coil from=459 to=483 evalue=NA)
ACD20_63_5

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4410..5012
DNA (603bp) protein (201aa)
50S ribosomal protein L25
seg (db=Seg db_id=seg from=179 to=192)
Ribosomal protein L25-like (db=superfamily db_id=SSF50715 from=3 to=189 evalue=5.1e-47 interpro_id=IPR011035 interpro_description=Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO=Biological Process: translation (GO:0006412))
ctc_TL5: ribosomal protein L25, Ctc-form (db=HMMTigr db_id=TIGR00731 from=6 to=180 evalue=2.0e-38 interpro_id=IPR001021 interpro_description=Ribosomal protein L25 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: 5S rRNA binding (GO:0008097))
ACD20_63_6

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5204..5638
DNA (435bp) protein (145aa)
acetyltransferase (GNAT) family protein; K00619 amino-acid N-acetyltransferase [EC:2.3.1.1] (db=KEGG evalue=4.0e-09 bit_score=63.5 identity=30.14 coverage=91.7241379310345)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=115 evalue=2.9e-14 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=4 to=111 evalue=1.7e-06 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Acetyltransf_1 (db=HMMPfam db_id=PF00583 from=40 to=107 evalue=4.5e-06 interpro_id=IPR022610 interpro_description=GCN5-related N-acetyltransferase, C-terminal)
ACD20_63_7

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comp(5635..6642)
DNA (1008bp) protein (336aa)
GDP-D-mannose dehydratase n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0QWK6_BRAHW (db=UNIREF evalue=2.0e-167 bit_score=591.0 identity=83.43 coverage=98.5119047619048)
gmd; GDP-D-mannose dehydratase rbh
gmd; GDP-D-mannose dehydratase rbh
gmd: GDP-mannose 4,6-dehydratase (db=HMMTigr db_id=TIGR01472 from=3 to=325 evalue=3.9e-255 interpro_id=IPR006368 interpro_description=GDP-mannose 4,6-dehydratase GO=Cellular Component: intracellular (GO:0005622), Molecular Function: GDP-mannose 4,6-dehydratase activity (GO:0008446), Biological Process: GDP-mannose metabolic process (GO:0019673))
ACD20_63_8

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comp(6789..7199)
DNA (411bp) protein (137aa)
6789..7199 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03655.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_63_9

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comp(7280..7822)
DNA (543bp) protein (181aa)
pentapeptide repeat-containing protein
Pentapeptide repeat-like (db=superfamily db_id=SSF141571 from=32 to=157 evalue=4.7e-25)
Pentapeptide (db=HMMPfam db_id=PF00805 from=86 to=125 evalue=5.4e-11 interpro_id=IPR001646 interpro_description=Pentapeptide repeat)
Pentapeptide (db=HMMPfam db_id=PF00805 from=53 to=88 evalue=2.3e-09 interpro_id=IPR001646 interpro_description=Pentapeptide repeat)
ACD20_63_10

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comp(7831..8463)
DNA (633bp) protein (211aa)
two component LuxR family transcriptional regulator
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=163 to=190 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE/RESPONSE REGULATOR (INTESTINAL BACTERIA - BACTEROIDES THETAIOTAOMICRON) (db=HMMPanther db_id=PTHR23283:SF21 from=7 to=123 evalue=9.7e-38)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=7 to=123 evalue=9.7e-38)
ACD20_63_11

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comp(8681..9358)
DNA (678bp) protein (226aa)
two component transcriptional regulator, LuxR family
CheY-like (db=superfamily db_id=SSF52172 from=1 to=137 evalue=1.2e-33 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=7 to=120 evalue=1.7e-31 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=7 to=133 evalue=5.0e-30)
ACD20_63_12

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comp(9508..11634)
DNA (2127bp) protein (709aa)
two-component sensor histidine kinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=268 to=290)
seg (db=Seg db_id=seg from=76 to=91)
ACD20_63_13

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comp(11775..12401)
DNA (627bp) protein (209aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=3 to=25)
seg (db=Seg db_id=seg from=141 to=149)
Uncharacterized protein {ECO:0000313|EMBL:EKE03660.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_63_14

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12764..14317
DNA (1554bp) protein (518aa)
two-component sensor histidine kinase
coiled-coil (db=Coil db_id=coil from=125 to=171 evalue=NA)
seg (db=Seg db_id=seg from=180 to=191)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=119 to=514 evalue=3.1e-87)
ACD20_63_15

Not on your lists

14330..14998
DNA (669bp) protein (223aa)
LuxR family transcriptional regulator
CheY-like (db=superfamily db_id=SSF52172 from=2 to=196 evalue=1.9e-37 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=5 to=118 evalue=1.6e-36 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=4 to=126 evalue=3.6e-33)
ACD20_63_16

Not on your lists

15039..15932
DNA (894bp) protein (298aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
Uncharacterized protein {ECO:0000313|EMBL:EKE03663.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_63_17

Not on your lists

15997..17598
DNA (1602bp) protein (534aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=366 to=388)
seg (db=Seg db_id=seg from=78 to=93)
seg (db=Seg db_id=seg from=180 to=190)
ACD20_63_18

Not on your lists

17723..17998
DNA (276bp) protein (92aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=26)
Uncharacterized protein {ECO:0000313|EMBL:EKE03665.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
Displaying 18 items

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