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ACD20_72

Alias: ACD20_6884.26272.14

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_72_1

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411..1217
DNA (807bp) protein (269aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K8Y6_9FIRM (db=UNIREF evalue=4.0e-10 bit_score=68.9 identity=44.26 coverage=22.3048327137546)
seg (db=Seg db_id=seg from=177 to=194)
coiled-coil (db=Coil db_id=coil from=183 to=204 evalue=NA)
ACD20_72_2

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comp(1183..1659)
DNA (477bp) protein (159aa)
1183..1659 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02553.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_72_3

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comp(1659..1922)
DNA (264bp) protein (88aa)
seg (db=Seg db_id=seg from=24 to=36)
Uncharacterized protein {ECO:0000313|EMBL:EKE02554.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_72_4

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comp(2102..3085)
DNA (984bp) protein (328aa)
coiled-coil (db=Coil db_id=coil from=220 to=241 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE02555.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_72_5

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3188..4255
DNA (1068bp) protein (356aa)
phage integrase family protein
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=168 to=346 evalue=8.1e-47 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=168 to=346 evalue=1.7e-40 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
Phage_integrase (db=HMMPfam db_id=PF00589 from=172 to=327 evalue=1.3e-34 interpro_id=IPR002104 interpro_description=Integrase, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
ACD20_72_6

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4945..5997
DNA (1053bp) protein (351aa)
metal dependent phosphohydrolase
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=145 to=334 evalue=2.8e-28)
HD (db=HMMPfam db_id=PF01966 from=172 to=292 evalue=3.5e-16 interpro_id=IPR006674 interpro_description=Metal-dependent phosphohydrolase, HD subdomain)
no description (db=HMMSmart db_id=SM00471 from=167 to=302 evalue=9.9e-09 interpro_id=IPR003607 interpro_description=Metal-dependent phosphohydrolase, HD domain GO=Molecular Function: catalytic activity (GO:0003824))
ACD20_72_7

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6186..7448
DNA (1263bp) protein (421aa)
phosphomethylpyrimidine synthase
phosphomethylpyrimidine synthase
Phosphomethylpyrimidine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=THIC_DESRM (db=UNIREF evalue=6.0e-134 bit_score=481.0 identity=58.59 coverage=99.2874109263658)
seg (db=Seg db_id=seg from=21 to=33)
ACD20_72_8

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7557..8609
DNA (1053bp) protein (351aa)
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase C-terminal domain-like (db=superfamily db_id=SSF47203 from=206 to=347 evalue=4.8e-25 interpro_id=IPR009075 interpro_description=Acyl-CoA dehydrogenase/oxidase C-terminal GO=Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627), Biological Process: oxidation reduction (GO:0055114))
Acyl-CoA_dh_1 (db=HMMPfam db_id=PF00441 from=206 to=346 evalue=8.9e-24 interpro_id=IPR006090 interpro_description=Acyl-CoA oxidase/dehydrogenase, type 1 GO=Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627), Biological Process: oxidation reduction (GO:0055114))
no description (db=Gene3D db_id=G3DSA:1.20.140.10 from=206 to=346 evalue=3.1e-22 interpro_id=IPR013764 interpro_description=Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
possible HBR? kelly wrighton (11/15/12)
ACD20_72_9

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8713..9846
DNA (1134bp) protein (378aa)
fo synthase subunit 2 (EC:2.5.1.-)
fo synthase subunit 2 (EC:2.5.1.-)
TIGR00423: radical SAM domain protein, CofH (db=HMMTigr db_id=TIGR00423 from=54 to=370 evalue=1.7e-139 interpro_id=IPR020050 interpro_description=FO synthase, subunit 2)
FO synthase subunit 2 with iron-sulphur cluster (db=HMMPIR db_id=PIRSF004762 from=1 to=377 evalue=1.1e-100 interpro_id=IPR005244 interpro_description=FO synthase, subunit 2-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765), Biological Process: cofactor biosynthetic process (GO:0051188), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
ACD20_72_10

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9939..11831
DNA (1893bp) protein (631aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=583 to=607 evalue=NA)
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083:SF20 from=232 to=583 evalue=1.2e-73)
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083 from=232 to=583 evalue=1.2e-73)
ACD20_72_11
GWF2_Melainabacteria_32_7_curated, Melainabacteria, Bacteria

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comp(11899..13122)
DNA (1224bp) protein (408aa)
acyl-CoA dehydrogenase domain-containing protein
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein n=2 Tax=Thermoanaerobacterium thermosaccharolyticum PF14_CLOTS">RepID=C6PF14_CLOTS (db=UNIREF evalue=3.0e-105 bit_score=385.0 identity=52.23 coverage=92.156862745098)
seg (db=Seg db_id=seg from=393 to=403)
EC number changed to 1.3.8.1 Jill Banfield (11/15/12)
ACD20_72_12

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13499..14452
DNA (954bp) protein (318aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZN35_NODSP (db=UNIREF evalue=3.0e-08 bit_score=62.8 identity=22.53 coverage=69.1823899371069)
NTF2-like (db=superfamily db_id=SSF54427 from=26 to=156 evalue=2.8e-08)
Uncharacterized protein {ECO:0000313|EMBL:EKE02535.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_72_13

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14452..14934
DNA (483bp) protein (161aa)
lspA; signal peptidase II (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Bacillus coagulans 36D1 RepID=C1P6X8_BACCO (db=UNIREF evalue=8.0e-24 bit_score=112.0 identity=42.77 coverage=95.6521739130435)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=81)
ACD20_72_14

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comp(15053..15199)
DNA (147bp) protein (49aa)
15053..15199 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02537.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_72_15

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comp(15445..15792)
DNA (348bp) protein (116aa)
seg (db=Seg db_id=seg from=81 to=96)
seg (db=Seg db_id=seg from=4 to=16)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
ACD20_72_16

Not on your lists

comp(15796..16728)
DNA (933bp) protein (311aa)
Pseudouridine synthase n=3 Tax=Thermoanaerobacteraceae RepID=B7R5S1_9THEO (db=UNIREF evalue=6.0e-86 bit_score=321.0 identity=55.29 coverage=92.9260450160772)
RluA; pseudouridylate synthase
PSI_RLU (db=PatternScan db_id=PS01129 from=140 to=154 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
rluA_subfam: pseudouridine synthase, RluA (db=HMMTigr db_id=TIGR00005 from=14 to=307 evalue=2.3e-126 interpro_id=IPR006225 interpro_description=Pseudouridine synthase, RluC/RluD GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
ACD20_72_17

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17165..17716
DNA (552bp) protein (184aa)
LysM (db=HMMPfam db_id=PF01476 from=94 to=150 evalue=1.5e-11 interpro_id=IPR018392 interpro_description=Peptidoglycan-binding lysin domain GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998))
no description (db=HMMSmart db_id=SM00257 from=93 to=150 evalue=2.4e-08 interpro_id=IPR002482 interpro_description=Peptidoglycan-binding Lysin subgroup GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998))
LysM domain (db=superfamily db_id=SSF54106 from=91 to=150 evalue=5.9e-06)
Uncharacterized protein {ECO:0000313|EMBL:EKE02540.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_72_18

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comp(17780..18091)
DNA (312bp) protein (104aa)
seg (db=Seg db_id=seg from=88 to=103)
seg (db=Seg db_id=seg from=47 to=56)
DUF1292 (db=HMMPfam db_id=PF06949 from=17 to=89 evalue=3.4e-12 interpro_id=IPR009711 interpro_description=Protein of unknown function DUF1292)
Uncharacterized protein {ECO:0000313|EMBL:EKE02541.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_72_19

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comp(18094..18513)
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase n=2 Tax=Clostridium butyricum RepID=B1QYT6_CLOBU (db=UNIREF evalue=4.0e-30 bit_score=133.0 identity=46.21 coverage=93.5714285714286)
putative holliday junction resolvase (EC:3.1.-.-)
RNAse_H_YqgF: RNAse H-fold protein YqgF (db=HMMTigr db_id=TIGR00250 from=7 to=136 evalue=6.6e-44 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
UPF0081 (db=HMMPfam db_id=PF03652 from=5 to=136 evalue=1.1e-43 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
ACD20_72_20

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comp(18516..20237)
DNA (1722bp) protein (574aa)
hypothetical protein (db=KEGG evalue=1.0e-14 bit_score=85.1 identity=21.6 coverage=71.602787456446)
Uncharacterized protein {ECO:0000313|EMBL:EKE02543.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD20_C00072G00020,ACD20_6884.26272.14G0020,ACD20_6884.26272.14_20 id=19597 tax=ACD20 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_72_21

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comp(20298..20573)
DNA (276bp) protein (92aa)
zf-C4_ClpX (db=HMMPfam db_id=PF06689 from=32 to=66 evalue=1.0e-12 interpro_id=IPR010603 interpro_description=Zinc finger, C4-type GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: ATPase activity (GO:0016887), Biological Process: protein metabolic process (GO:0019538), Molecular Function: protein dimerization activity (GO:0046983))
Glucocorticoid receptor-like (DNA-binding domain) (db=superfamily db_id=SSF57716 from=31 to=68 evalue=2.2e-08)
HSL AND CLP PROTEASE (db=HMMPanther db_id=PTHR11262 from=34 to=88 evalue=0.00088)
ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX (db=HMMPanther db_id=PTHR11262:SF4 from=34 to=88 evalue=0.00088 interpro_id=IPR004487 interpro_description=Clp protease, ATP-binding subunit ClpX GO=Molecular Function: ATP binding (GO:0005524), Biological Process: protein folding (GO:0006457), Molecular Function: unfolded protein binding (GO:0051082))
ACD20_72_22

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comp(20673..21395)
DNA (723bp) protein (241aa)
peptidase M50
seg (db=Seg db_id=seg from=148 to=156)
seg (db=Seg db_id=seg from=2 to=11)
transmembrane_regions (db=TMHMM db_id=tmhmm from=190 to=212)
ACD20_72_23

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21740..22150
DNA (411bp) protein (137aa)
trxA6; thioredoxin; K05838 putative thioredoxin (db=KEGG evalue=3.0e-08 bit_score=60.8 identity=30.21 coverage=65.6934306569343)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=7 to=20)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=28 to=136 evalue=6.6e-20 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
ACD20_72_24

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22143..22850
DNA (708bp) protein (236aa)
cytochrome c biogenesis protein transmembrane region
transmembrane_regions (db=TMHMM db_id=tmhmm from=207 to=229)
transmembrane_regions (db=TMHMM db_id=tmhmm from=172 to=194)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=51)
ACD20_72_25

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comp(22942..23124)
DNA (183bp) protein (61aa)
22942..23124 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02548.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_72_26

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comp(23442..24170)
DNA (729bp) protein (243aa)
dethiobiotin synthase (EC:6.3.3.3)
seg (db=Seg db_id=seg from=6 to=18)
seg (db=Seg db_id=seg from=129 to=138)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=222 evalue=2.3e-52)
ACD20_72_27

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comp(24294..25694)
DNA (1401bp) protein (467aa)
S-layer region-like protein
S-layer region-like n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3MCE6_ANAVT (db=UNIREF evalue=2.0e-32 bit_score=144.0 identity=41.48 coverage=36.6167023554604)
seg (db=Seg db_id=seg from=10 to=27)
seg (db=Seg db_id=seg from=391 to=438)
ACD20_72_28

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25968..26270
DNA (303bp) protein (101aa)
seg (db=Seg db_id=seg from=13 to=30)
coiled-coil (db=Coil db_id=coil from=3 to=31 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE02551.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 28 items

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