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ACD20_74

Alias: ACD20_47045.25689.14

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_74_1

Not on your lists

comp(70..849)
DNA (780bp) protein (260aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=208 to=230)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=185 to=229)
Uncharacterized protein {ECO:0000313|EMBL:EKE03036.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_74_2

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comp(1037..3136)
DNA (2100bp) protein (700aa)
Malic enzyme n=1 Tax=Tetrahymena thermophila SB210 RepID=Q24I35_TETTH (db=UNIREF evalue=1.0e-147 bit_score=527.0 identity=44.48 coverage=98.2857142857143)
NAD-dependent malic enzyme (NAD-ME) (EC:1.1.1.38)
NAD-dependent malic enzyme (NAD-ME) (EC:1.1.1.38)
seg (db=Seg db_id=seg from=655 to=670)
cytoplasmic kelly wrighton (11/15/12)
ACD20_74_3

Not on your lists

3411..4382
DNA (972bp) protein (324aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K6R3_CYAP7 (db=UNIREF evalue=4.0e-99 bit_score=365.0 identity=58.2 coverage=98.4567901234568)
seg (db=Seg db_id=seg from=87 to=103)
ACD20_74_4

Not on your lists

comp(4468..4674)
DNA (207bp) protein (69aa)
seg (db=Seg db_id=seg from=2 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
Uncharacterized protein {ECO:0000313|EMBL:EKE03039.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_74_5

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5511..6464
DNA (954bp) protein (318aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Geobacter lovleyi SZ RepID=B3E6N7_GEOLS (db=UNIREF evalue=2.0e-141 bit_score=505.0 identity=74.52 coverage=97.1698113207547)
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=6 to=313 evalue=5.6e-169)
ACD20_74_6
GWF2_Melainabacteria_32_7_curated, Melainabacteria, Bacteria

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6607..6960
DNA (354bp) protein (118aa)
ugd; UDP-glucose 6-dehydrogenase
UDPG_MGDP_dh_N (db=HMMPfam db_id=PF03721 from=1 to=104 evalue=2.1e-37 interpro_id=IPR001732 interpro_description=UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: NAD or NADH binding (GO:0051287), Biological Process: oxidation reduction (GO:0055114))
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=1 to=105 evalue=1.2e-33 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: binding (GO:0005488), Biological Process: metabolic process (GO:0008152))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=105 evalue=4.0e-30)
ACD20_74_7
GWF2_Melainabacteria_32_7_curated, Melainabacteria, Bacteria

Not on your lists

7065..7508
DNA (444bp) protein (148aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=36 to=130 evalue=1.6e-26 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: binding (GO:0005488), Biological Process: metabolic process (GO:0008152))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=37 to=129 evalue=1.2e-21)
UDPG_MGDP_dh_N (db=HMMPfam db_id=PF03721 from=35 to=107 evalue=4.6e-21 interpro_id=IPR001732 interpro_description=UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: NAD or NADH binding (GO:0051287), Biological Process: oxidation reduction (GO:0055114))
ACD20_74_8

Not on your lists

7513..8307
DNA (795bp) protein (265aa)
UDP-glucose 6-dehydrogenase n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0QYB3_BRAHW (db=UNIREF evalue=3.0e-107 bit_score=391.0 identity=70.36 coverage=95.0943396226415)
ugd; UDP-glucose 6-dehydrogenase
ugd; UDP-glucose 6-dehydrogenase
UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE (db=HMMPanther db_id=PTHR11374 from=1 to=262 evalue=4.3e-124 interpro_id=IPR014028 interpro_description=UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: NAD or NADH binding (GO:0051287), Biological Process: oxidation reduction (GO:0055114))
ACD20_74_9

Not on your lists

comp(8326..8880)
DNA (555bp) protein (185aa)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=182 evalue=1.8e-09)
Uncharacterized protein {ECO:0000313|EMBL:EKE03019.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_74_10

Not on your lists

comp(8901..9362)
DNA (462bp) protein (154aa)
CMP/dCMP deaminase
DEOXYCYTIDYLATE DEAMINASE-RELATED (db=HMMPanther db_id=PTHR11086 from=2 to=121 evalue=7.5e-29 interpro_id=IPR015517 interpro_description=Cytidine deaminase)
DEOXYCYTIDYLATE DEAMINASE (db=HMMPanther db_id=PTHR11086:SF2 from=2 to=121 evalue=7.5e-29)
no description (db=Gene3D db_id=G3DSA:3.40.140.10 from=3 to=153 evalue=1.0e-28)
ACD20_74_11

Not on your lists

comp(9441..11141)
DNA (1701bp) protein (567aa)
protease (EC:3.4.-.-)
seg (db=Seg db_id=seg from=395 to=408)
Peptidase_U32 (db=HMMPfam db_id=PF01136 from=70 to=152 evalue=4.2e-05 interpro_id=IPR001539 interpro_description=Peptidase U32 GO=Biological Process: proteolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233))
protease (EC:3.4.-.-); K08303 putative protease [EC:3.4.-.-] alias=ACD20_47045.25689.14G0011,ACD20_47045.25689.14_11,ACD20_C00074G00011 id=19625 tax=ACD20 species=Clostridium tetani genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_74_12

Not on your lists

11284..11928
DNA (645bp) protein (215aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=150 to=161)
seg (db=Seg db_id=seg from=93 to=106)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=22 evalue=5.0)
ACD20_74_13

Not on your lists

11961..13808
DNA (1848bp) protein (616aa)
type II and III secretion system protein
Bacterial type II and III secretion system protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQ59_9SYNE (db=UNIREF evalue=9.0e-29 bit_score=132.0 identity=37.5 coverage=29.5454545454545)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
seg (db=Seg db_id=seg from=249 to=287)
ACD20_74_14

Not on your lists

13828..16008
DNA (2181bp) protein (727aa)
type ii secretion system protein e
type ii secretion system protein e
seg (db=Seg db_id=seg from=409 to=424)
seg (db=Seg db_id=seg from=303 to=316)
ACD20_74_15

Not on your lists

16029..17255
DNA (1227bp) protein (409aa)
type II secretion system protein
seg (db=Seg db_id=seg from=179 to=196)
seg (db=Seg db_id=seg from=387 to=400)
transmembrane_regions (db=TMHMM db_id=tmhmm from=174 to=196)
ACD20_74_16

Not on your lists

17276..17572
DNA (297bp) protein (99aa)
17276..17572 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03026.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_74_17

Not on your lists

comp(17616..17819)
DNA (204bp) protein (68aa)
17616..17819 - (rbs_motif=GGA/GAG/AGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03027.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_74_18

Not on your lists

18036..19190
DNA (1155bp) protein (385aa)
hypothetical protein
seg (db=Seg db_id=seg from=323 to=337)
seg (db=Seg db_id=seg from=371 to=384)
seg (db=Seg db_id=seg from=216 to=229)
several CxxC Jill Banfield (11/15/12)
ACD20_74_19

Not on your lists

comp(19382..20452)
DNA (1071bp) protein (357aa)
aIF-2BI family translation initiation factor (EC:5.3.1.23)
aIF-2BI family translation initiation factor (EC:5.3.1.23)
Methylthioribose-1-phosphate isomerase n=1 Tax=Geobacter lovleyi SZ RepID=MTNA_GEOLS (db=UNIREF evalue=7.0e-88 bit_score=327.0 identity=58.82 coverage=94.6778711484594)
seg (db=Seg db_id=seg from=164 to=177)
methionine salvage Jill Banfield (11/15/12)
ACD20_74_20

Not on your lists

comp(20696..21148)
DNA (453bp) protein (151aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
OmpH-like (db=superfamily db_id=SSF111384 from=23 to=148 evalue=1.3e-13 interpro_id=IPR005632 interpro_description=Outer membrane chaperone Skp (OmpH) GO=Molecular Function: protein binding (GO:0005515))
OmpH (db=HMMPfam db_id=PF03938 from=18 to=148 evalue=1.4e-12 interpro_id=IPR005632 interpro_description=Outer membrane chaperone Skp (OmpH) GO=Molecular Function: protein binding (GO:0005515))
Uncharacterized protein {ECO:0000313|EMBL:EKE03030.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_74_21

Not on your lists

comp(21395..23314)
DNA (1920bp) protein (640aa)
yaeT; surface antigen (D15)
Surface antigen n=1 Tax=Acidaminococcus sp. D21 RepID=C0WEN7_9FIRM (db=UNIREF evalue=5.0e-52 bit_score=209.0 identity=29.64 coverage=88.125)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
seg (db=Seg db_id=seg from=283 to=301)
ACD20_74_22

Not on your lists

23585..23914
DNA (330bp) protein (110aa)
CutA1 divalent ion tolerance protein
CutA1 (db=HMMPfam db_id=PF03091 from=5 to=104 evalue=9.6e-38 interpro_id=IPR004323 interpro_description=Divalent ion tolerance protein, CutA1 GO=Biological Process: response to metal ion (GO:0010038))
GlnB-like (db=superfamily db_id=SSF54913 from=1 to=104 evalue=1.0e-36 interpro_id=IPR011322 interpro_description=Nitrogen regulatory PII-like, alpha/beta)
DIVALENT CATION TOLERANCE CUTA-RELATED (db=HMMPanther db_id=PTHR23419 from=5 to=104 evalue=2.4e-35 interpro_id=IPR004323 interpro_description=Divalent ion tolerance protein, CutA1 GO=Biological Process: response to metal ion (GO:0010038))
ACD20_74_23

Not on your lists

23911..24762
DNA (852bp) protein (284aa)
23911..24762 + (rbs_motif=AGGA/GGAG/GAGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03033.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_74_24

Not on your lists

25495..25704
DNA (210bp) protein (70aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FFZ2_9GAMM (db=UNIREF evalue=2.0e-19 bit_score=97.8 identity=62.12 coverage=92.8571428571429)
Uncharacterized protein {ECO:0000313|EMBL:EKE03034.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 24 items

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