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ACD20_81

Alias: ACD20_10278.33918.14

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_81_1

Not on your lists

comp(1..138)
DNA (138bp) protein (46aa)
1..138 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE04794.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_81_2

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594..2306
DNA (1713bp) protein (571aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=192 to=214)
seg (db=Seg db_id=seg from=13 to=30)
ACD20_81_3

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2347..3879
DNA (1533bp) protein (511aa)
putative methyl-accepting chemotaxis protein
seg (db=Seg db_id=seg from=233 to=245)
seg (db=Seg db_id=seg from=212 to=227)
seg (db=Seg db_id=seg from=29 to=46)
ACD20_81_4

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3969..4523
DNA (555bp) protein (185aa)
cheW; purine-binding chemotaxis protein chew
seg (db=Seg db_id=seg from=166 to=179)
seg (db=Seg db_id=seg from=133 to=145)
no description (db=HMMSmart db_id=SM00260 from=8 to=145 evalue=4.6e-39 interpro_id=IPR002545 interpro_description=CheW-like protein GO=Molecular Function: signal transducer activity (GO:0004871), Cellular Component: intracellular (GO:0005622), Biological Process: chemotaxis (GO:0006935), Biological Process: signal transduction (GO:0007165))
ACD20_81_5

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4545..6512
DNA (1968bp) protein (656aa)
cheA2; chemotaxis protein CheA (EC:2.7.13.3)
cheA2; chemotaxis protein CheA (EC:2.7.13.3)
CheA signal transduction histidine kinases n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMP8_9FIRM (db=UNIREF evalue=2.0e-148 bit_score=530.0 identity=44.74 coverage=97.2560975609756)
coiled-coil (db=Coil db_id=coil from=115 to=136 evalue=NA)
ACD20_81_6

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6514..7098
DNA (585bp) protein (195aa)
cheC; CheC chemotaxis protein
Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9W8_9FIRM (db=UNIREF evalue=1.0e-18 bit_score=95.9 identity=32.62 coverage=91.2820512820513)
no description (db=Gene3D db_id=G3DSA:3.40.1550.10 from=1 to=191 evalue=1.2e-36)
CheC-like (db=superfamily db_id=SSF103039 from=1 to=194 evalue=1.7e-34)
ACD20_81_7

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7131..7493
DNA (363bp) protein (121aa)
Response regulator receiver protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN26_9FIRM (db=UNIREF evalue=2.0e-45 bit_score=184.0 identity=70.83 coverage=98.3471074380165)
cheY; Chemotaxis protein CheY
no description (db=HMMSmart db_id=SM00448 from=3 to=115 evalue=2.0e-36 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY-like (db=superfamily db_id=SSF52172 from=2 to=120 evalue=2.1e-36 interpro_id=IPR011006 interpro_description=CheY-like)
ACD20_81_8

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7767..9131
DNA (1365bp) protein (455aa)
OtsA, Trehalose-6-phosphate synthase n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J2C2_DEIGD (db=UNIREF evalue=3.0e-106 bit_score=389.0 identity=41.52 coverage=99.5604395604396)
alpha,alpha-trehalose-phosphate synthase (UDP-forming) (EC:2.4.1.15 3.1.3.12)
alpha,alpha-trehalose-phosphate synthase (UDP-forming) (EC:2.4.1.15 3.1.3.12)
coiled-coil (db=Coil db_id=coil from=417 to=438 evalue=NA)
ACD20_81_9

Not on your lists

comp(9516..12032)
DNA (2517bp) protein (839aa)
Glycoside hydrolase family 57 n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NHI2_ROSCS (db=UNIREF evalue=0.0 bit_score=739.0 identity=47.5 coverage=91.4183551847437)
glycoside hydrolase protein
glycoside hydrolase protein
DUF3536 (db=HMMPfam db_id=PF12055 from=347 to=630 evalue=1.3e-109 interpro_id=IPR021923 interpro_description=Protein of unknown function DUF3536)
ACD20_81_10

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comp(12084..13376)
DNA (1293bp) protein (431aa)
glycosyltransferase
glycosyltransferase
Glycosyl transferase group 1 n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5Y1_SPHTD (db=UNIREF evalue=3.0e-111 bit_score=405.0 identity=46.12 coverage=97.215777262181)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=45 to=421 evalue=1.1e-80)
ACD20_81_11

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14025..14369
DNA (345bp) protein (115aa)
14025..14369 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04776.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_81_12

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14526..15200
DNA (675bp) protein (225aa)
haloacid dehalogenase superfamily protein, phosphoserine phosphatase/2,3-diketo-5-methylthio-1-phosphopentane phosphatase
YkrX n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850DEA (db=UNIREF evalue=1.0e-31 bit_score=140.0 identity=38.39 coverage=91.1111111111111)
HAD-like (db=superfamily db_id=SSF56784 from=4 to=218 evalue=5.4e-35)
DKMTPPase-SF: 2,3-diketo-5-methylthio-1- (db=HMMTigr db_id=TIGR01489 from=7 to=191 evalue=6.4e-29 interpro_id=IPR006384 interpro_description=Pyridoxal phosphate phosphatase-related GO=Molecular Function: phosphatase activity (GO:0016791))
Met salvage pathway? (see Sato et al. 2007,Science) Jill Banfield (11/15/12)
ACD20_81_13

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15293..16357
DNA (1065bp) protein (355aa)
glycerol dehydrogenase
seg (db=Seg db_id=seg from=90 to=101)
Glycerol dehydrogenase (db=HMMPIR db_id=PIRSF000112 from=1 to=354 evalue=1.3e-74 interpro_id=IPR016205 interpro_description=Glycerol dehydrogenase GO=Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
Dehydroquinate synthase-like (db=superfamily db_id=SSF56796 from=2 to=330 evalue=1.2e-47)
ACD20_81_14

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comp(16396..16626)
DNA (231bp) protein (77aa)
16396..16626 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04779.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_81_15

Not on your lists

comp(16683..16865)
DNA (183bp) protein (61aa)
16683..16865 - (rbs_motif=AGxAGG/AGGxGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04780.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_81_16

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17270..17530
DNA (261bp) protein (87aa)
seg (db=Seg db_id=seg from=70 to=86)
Uncharacterized protein {ECO:0000313|EMBL:EKE04781.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_81_17

Not on your lists

17813..18079
DNA (267bp) protein (89aa)
17813..18079 + (rbs_motif=AGGAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04782.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_81_18

Not on your lists

comp(18123..18446)
DNA (324bp) protein (108aa)
18123..18446 - (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04783.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_81_19

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comp(18458..19777)
DNA (1320bp) protein (440aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J997_DESRM (db=UNIREF evalue=2.0e-121 bit_score=439.0 identity=53.08 coverage=94.5454545454545)
murA: UDP-N-acetylglucosamine 1-carboxyvinyl (db=HMMTigr db_id=TIGR01072 from=2 to=420 evalue=6.6e-230 interpro_id=IPR005750 interpro_description=UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO=Molecular Function: transferase activity (GO:0016740), Biological Process: UDP-N-acetylgalactosamine biosynthetic process (GO:0019277))
ACD20_81_20

Not on your lists

20232..22088
DNA (1857bp) protein (619aa)
ftsH; cell division protein FtsH
ftsH; cell division protein FtsH
Cell division protease ftsH homolog 4 n=1 Tax=Synechocystis sp. PCC 6803 RepID=FTSH4_SYNY3 (db=UNIREF evalue=1.0e-180 bit_score=637.0 identity=59.44 coverage=96.7689822294023)
transmembrane_regions (db=TMHMM db_id=tmhmm from=109 to=131)
ACD20_81_21

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22162..23574
DNA (1413bp) protein (471aa)
glutamate synthase (NADPH), homotetrameric
glutamate synthase (NADPH), homotetrameric
Glutamate synthase (NADPH), homotetrameric n=2 Tax=Clostridium carboxidivorans P7 RepID=C6PQL6_9CLOT (db=UNIREF evalue=1.0e-131 bit_score=473.0 identity=57.79 coverage=96.1783439490446)
gltA: glutamate synthase (NADPH), homotetram (db=HMMTigr db_id=TIGR01316 from=16 to=459 evalue=4.8e-194 interpro_id=IPR006004 interpro_description=Glutamate synthase (NADPH), homotetrameric)
ACD20_81_22

Not on your lists

23668..25827
DNA (2160bp) protein (720aa)
hypothetical protein
seg (db=Seg db_id=seg from=107 to=128)
seg (db=Seg db_id=seg from=33 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=479 to=496)
10 psort distant to glycosyl transferase family protein kelly wrighton (11/15/12)
ACD20_81_23

Not on your lists

25837..26379
DNA (543bp) protein (181aa)
3-methyladenine DNA glycosylase (EC:3.2.2.21)
Pur_DNA_glyco (db=HMMPfam db_id=PF02245 from=6 to=176 evalue=6.4e-65 interpro_id=IPR003180 interpro_description=Methylpurine-DNA glycosylase (MPG) GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: alkylbase DNA N-glycosylase activity (GO:0003905), Biological Process: base-excision repair (GO:0006284))
no description (db=Gene3D db_id=G3DSA:3.10.300.10 from=4 to=178 evalue=1.5e-62 interpro_id=IPR003180 interpro_description=Methylpurine-DNA glycosylase (MPG) GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: alkylbase DNA N-glycosylase activity (GO:0003905), Biological Process: base-excision repair (GO:0006284))
FMT C-terminal domain-like (db=superfamily db_id=SSF50486 from=1 to=179 evalue=3.3e-61 interpro_id=IPR011034 interpro_description=Formyl transferase, C-terminal-like GO=Molecular Function: catalytic activity (GO:0003824))
ACD20_81_24

Not on your lists

comp(26411..27223)
DNA (813bp) protein (271aa)
glycosyl transferase 2
Glycosyl transferase, family 2 n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M8C5_CAPGI (db=UNIREF evalue=3.0e-54 bit_score=215.0 identity=43.6 coverage=90.4059040590406)
transmembrane_regions (db=TMHMM db_id=tmhmm from=224 to=246)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=133 evalue=4.3e-27)
ACD20_81_25

Not on your lists

27600..28835
DNA (1236bp) protein (412aa)
putative esterase of the alpha-beta hydrolase superfamily
coiled-coil (db=Coil db_id=coil from=372 to=400 evalue=NA)
coiled-coil (db=Coil db_id=coil from=295 to=316 evalue=NA)
FabD/lysophospholipase-like (db=superfamily db_id=SSF52151 from=1 to=310 evalue=7.8e-36 interpro_id=IPR016035 interpro_description=Acyl transferase/acyl hydrolase/lysophospholipase GO=Biological Process: metabolic process (GO:0008152))
ACD20_81_26

Not on your lists

comp(28832..29644)
DNA (813bp) protein (271aa)
amidohydrolase
UPF0012 (db=PatternScan db_id=PS01227 from=149 to=169 evalue=0.0 interpro_id=IPR001110 interpro_description=Uncharacterised protein family UPF0012, conserved site)
Carbon-nitrogen hydrolase (db=superfamily db_id=SSF56317 from=1 to=263 evalue=1.3e-82 interpro_id=IPR003010 interpro_description=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase GO=Biological Process: nitrogen compound metabolic process (GO:0006807), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
no description (db=Gene3D db_id=G3DSA:3.60.110.10 from=5 to=268 evalue=1.1e-78 interpro_id=IPR003010 interpro_description=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase GO=Biological Process: nitrogen compound metabolic process (GO:0006807), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
ACD20_81_27

Not on your lists

comp(29753..30673)
DNA (921bp) protein (307aa)
29753..30673 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04792.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_81_28

Not on your lists

comp(30796..32259)
DNA (1464bp) protein (488aa)
ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-)
ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB56_CARHZ (db=UNIREF evalue=0.0 bit_score=652.0 identity=66.87 coverage=97.7459016393443)
mena_SCO4490: menaquinone biosynthesis d (db=HMMTigr db_id=TIGR03701 from=8 to=444 evalue=2.2e-279 interpro_id=IPR022390 interpro_description=Menaquinone biosynthesis decarboxylase, SCO4490 GO=Biological Process: menaquinone biosynthetic process (GO:0009234), Molecular Function: carboxy-lyase activity (GO:0016831))
cytoplasmic kelly wrighton (11/15/12)
ACD20_81_29

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comp(32794..33072)
DNA (279bp) protein (93aa)
GIY-YIG domain-containing protein
GIY-YIG (db=HMMPfam db_id=PF01541 from=7 to=77 evalue=8.3e-13 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=4 to=76 evalue=1.3e-12 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
no description (db=HMMSmart db_id=SM00465 from=5 to=83 evalue=0.0013 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
ACD20_81_30

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comp(33407..33796)
DNA (390bp) protein (130aa)
glyoxalase/bleomycin resistance protein/dioxygenase
GLYOXALASE_I_1 (db=PatternScan db_id=PS00934 from=5 to=26 evalue=0.0 interpro_id=IPR018146 interpro_description=Glyoxalase I, conserved site GO=Molecular Function: lactoylglutathione lyase activity (GO:0004462), Molecular Function: metal ion binding (GO:0046872))
no description (db=Gene3D db_id=G3DSA:3.10.180.10 from=2 to=125 evalue=1.7e-33)
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (db=superfamily db_id=SSF54593 from=1 to=126 evalue=3.0e-24)
Displaying 30 items

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