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ACD20_111

Alias: ACD20_13.14967.14

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_111_1

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comp(168..1412)
DNA (1245bp) protein (415aa)
major facilitator superfamily transporter
Major facilitator superfamily transporter (MFS) conserved transporter n=2 Tax=Prevotella RepID=D3IKJ0_9BACT (db=UNIREF evalue=3.0e-39 bit_score=166.0 identity=32.73 coverage=88.6746987951807)
transmembrane_regions (db=TMHMM db_id=tmhmm from=367 to=389)
seg (db=Seg db_id=seg from=10 to=15)
ACD20_111_2

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1914..2222
DNA (309bp) protein (103aa)
1914..2222 + (rbs_motif=AGGA/GGAG/GAGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04619.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_111_3

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comp(2279..3658)
DNA (1380bp) protein (460aa)
radical SAM family protein
radical SAM family protein
Radical SAM n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK91_MOOTA (db=UNIREF evalue=2.0e-90 bit_score=337.0 identity=45.16 coverage=86.7391304347826)
seg (db=Seg db_id=seg from=275 to=284)
ACD20_111_4

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comp(3980..5050)
DNA (1071bp) protein (357aa)
glycosyl transferase family 9
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=11 to=356 evalue=2.8e-60)
Glyco_transf_9 (db=HMMPfam db_id=PF01075 from=87 to=325 evalue=3.4e-24 interpro_id=IPR002201 interpro_description=Glycosyl transferase, family 9 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity (GO:0016740))
no description (db=Gene3D db_id=G3DSA:3.40.50.2000 from=163 to=355 evalue=7.5e-24)
ACD20_111_5

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comp(5089..6549)
DNA (1461bp) protein (487aa)
inorganic carbon transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=391 to=413)
transmembrane_regions (db=TMHMM db_id=tmhmm from=433 to=455)
transmembrane_regions (db=TMHMM db_id=tmhmm from=460 to=482)
ACD20_111_6

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comp(6551..7066)
DNA (516bp) protein (172aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=11 to=24)
Uncharacterized protein {ECO:0000313|EMBL:EKE04623.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_111_7

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comp(7087..8121)
DNA (1035bp) protein (345aa)
bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
RfaE bifunctional protein n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HPG9_CYAP4 (db=UNIREF evalue=6.0e-70 bit_score=268.0 identity=46.39 coverage=94.2028985507246)
seg (db=Seg db_id=seg from=61 to=74)
seg (db=Seg db_id=seg from=288 to=301)
ACD20_111_8

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8260..8619
DNA (360bp) protein (120aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
Uncharacterized protein {ECO:0000313|EMBL:EKE04625.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_111_9

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8849..9976
DNA (1128bp) protein (376aa)
hypothetical protein
DUF2229 (db=HMMPfam db_id=PF09989 from=18 to=245 evalue=9.9e-10 interpro_id=IPR018709 interpro_description=Protein of unknown function DUF2229, CoA enzyme activase)
Uncharacterized protein {ECO:0000313|EMBL:EKE04626.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD20_13.14967.14G0009,ACD20_13.14967.14_9,ACD20_C00111G00009 id=20137 tax=ACD20 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_111_10

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10097..10843
DNA (747bp) protein (249aa)
glycosyl transferase family 2 protein
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=12 to=246 evalue=2.8e-40)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=229 evalue=8.6e-31)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=7 to=168 evalue=2.8e-20 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD20_111_11

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10830..11915
DNA (1086bp) protein (362aa)
radical SAM protein
MOAA_NIFB_PQQE (db=PatternScan db_id=PS01305 from=41 to=52 evalue=0.0 interpro_id=IPR000385 interpro_description=MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: metal ion binding (GO:0046872), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=34 to=354 evalue=5.3e-49)
Radical_SAM (db=HMMPfam db_id=PF04055 from=40 to=195 evalue=5.4e-19 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
ACD20_111_12

Not on your lists

comp(12212..12502)
DNA (291bp) protein (97aa)
RNP-1 like RNA-binding protein
RNP-1 like RNA-binding protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=D4H7Q0_DENA2 (db=UNIREF evalue=1.0e-19 bit_score=98.6 identity=51.04 coverage=95.8762886597938)
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=2 to=93 evalue=1.7e-31 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
RNA-binding domain, RBD (db=superfamily db_id=SSF54928 from=2 to=94 evalue=1.3e-30)
ACD20_111_13

Not on your lists

12737..14491
DNA (1755bp) protein (585aa)
GAF sensor signal transduction histidine kinase
coiled-coil (db=Coil db_id=coil from=234 to=255 evalue=NA)
seg (db=Seg db_id=seg from=352 to=363)
TWO-COMPONENT SYSTEM HISTIDINE KINASE, FRRD (db=HMMPanther db_id=PTHR23283:SF33 from=4 to=580 evalue=5.3e-56)
ACD20_111_14

Not on your lists

14502..14966
DNA (465bp) protein (155aa)
two-component response regulator
seg (db=Seg db_id=seg from=6 to=13)
CheY-like (db=superfamily db_id=SSF52172 from=8 to=137 evalue=1.0e-28 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=9 to=122 evalue=9.3e-27 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Displaying 14 items

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