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ACD20_120

Alias: ACD20_30338.20765.14

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_120_1

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comp(1..186)
DNA (186bp) protein (62aa)
1..186 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03474.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_120_2

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comp(427..837)
DNA (411bp) protein (137aa)
transcriptional regulator
HTH_MERR_1 (db=PatternScan db_id=PS00552 from=24 to=46 evalue=0.0 interpro_id=IPR000551 interpro_description=HTH transcriptional regulator, MerR GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00422 from=21 to=90 evalue=4.4e-16 interpro_id=IPR000551 interpro_description=HTH transcriptional regulator, MerR GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=21 to=111 evalue=1.6e-14 interpro_id=IPR009061 interpro_description=Putative DNA binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
ACD20_120_3

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1632..2099
DNA (468bp) protein (156aa)
fliW; putative flagellar assembly factor FliW
Flagellar assembly factor fliW n=1 Tax=Selenomonas noxia ATCC 43541 RepID=D4S627_9FIRM (db=UNIREF evalue=3.0e-24 bit_score=113.0 identity=41.78 coverage=92.948717948718)
BH3618-like (db=superfamily db_id=SSF141457 from=1 to=148 evalue=1.7e-41)
FliW (db=HMMPfam db_id=PF02623 from=19 to=140 evalue=7.1e-35 interpro_id=IPR003775 interpro_description=Flagellar assembly factor FliW GO=Biological Process: flagellum assembly (GO:0009296), Cellular Component: flagellum (GO:0019861))
ACD20_120_4

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2132..2458
DNA (327bp) protein (109aa)
carbon storage regulator (csrA)
Carbon storage regulator homolog n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJJ4_9FIRM (db=UNIREF evalue=1.0e-09 bit_score=65.9 identity=69.49 coverage=53.2110091743119)
seg (db=Seg db_id=seg from=42 to=51)
csrA: carbon storage regulator (db=HMMTigr db_id=TIGR00202 from=1 to=67 evalue=1.7e-24 interpro_id=IPR003751 interpro_description=Carbon storage regulator GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of carbohydrate metabolic process (GO:0006109), Biological Process: mRNA catabolic process (GO:0006402))
ACD20_120_5

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2461..3189
DNA (729bp) protein (243aa)
TPR-like (db=superfamily db_id=SSF48452 from=12 to=217 evalue=2.5e-08)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=157 to=228 evalue=0.00062 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TPR_REGION (db=ProfileScan db_id=PS50293 from=158 to=225 evalue=10.035 interpro_id=IPR013026 interpro_description=Tetratricopeptide repeat-containing)
Uncharacterized protein {ECO:0000313|EMBL:EKE03478.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_120_6

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comp(3495..5168)
DNA (1674bp) protein (558aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=333 to=355)
transmembrane_regions (db=TMHMM db_id=tmhmm from=6 to=23)
seg (db=Seg db_id=seg from=325 to=358)
seg (db=Seg db_id=seg from=238 to=261)
ACD20_120_7

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comp(5221..5784)
DNA (564bp) protein (188aa)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=2 to=186 evalue=8.5e-19 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=20 to=69 evalue=9.5e-08 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=93 to=186 evalue=9.4e-07 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=5 to=73 evalue=6.3e-06 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD20_120_8

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comp(5910..8285)
DNA (2376bp) protein (792aa)
seg (db=Seg db_id=seg from=303 to=313)
seg (db=Seg db_id=seg from=324 to=342)
seg (db=Seg db_id=seg from=519 to=538)
seg (db=Seg db_id=seg from=778 to=790)
ACD20_120_9

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8811..9917
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Deferribacter desulfuricans SSM1 RepID=D3PA45_DEFDS (db=UNIREF evalue=6.0e-180 bit_score=633.0 identity=79.62 coverage=99.4579945799458)
hypothetical protein
hypothetical protein
N-terminal nucleophile aminohydrolases (Ntn hydrolases) (db=superfamily db_id=SSF56235 from=116 to=359 evalue=2.2e-18)
ACD20_120_10

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9905..11545
DNA (1641bp) protein (547aa)
Ferredoxin-dependent glutamate synthase, alpha subunit n=1 Tax=Deferribacter desulfuricans SSM1 RepID=D3PA44_DEFDS (db=UNIREF evalue=0.0 bit_score=954.0 identity=81.87 coverage=99.6343692870201)
ferredoxin-dependent glutamate synthase subunit alpha (EC:1.4.7.1)
ferredoxin-dependent glutamate synthase subunit alpha (EC:1.4.7.1)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=79 to=90 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
likely NADPH 4Fe-4S residues confirmed in aa kelly wrighton (11/15/12)
ACD20_120_11

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11582..13951
DNA (2370bp) protein (790aa)
ferredoxin-dependent glutamate synthase subunit beta (EC:1.4.7.1)
ferredoxin-dependent glutamate synthase subunit beta (EC:1.4.7.1)
Ferredoxin-dependent glutamate synthase, beta subunit n=1 Tax=Deferribacter desulfuricans SSM1 RepID=D3PA43_DEFDS (db=UNIREF evalue=0.0 bit_score=1112.0 identity=70.32 coverage=97.8481012658228)
seg (db=Seg db_id=seg from=170 to=181)
likely NADPH kelly wrighton (11/15/12)
ACD20_120_12

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14144..15355
DNA (1212bp) protein (404aa)
Argininosuccinate synthase n=1 Tax=Brachyspira murdochii DSM 12563 RepID=D5U8X2_9SPIR (db=UNIREF evalue=1.0e-180 bit_score=636.0 identity=73.95 coverage=99.5049504950495)
argininosuccinate synthase (EC:6.3.4.5)
argininosuccinate synthase (EC:6.3.4.5)
ARGININOSUCCIN_SYN_1 (db=PatternScan db_id=PS00564 from=8 to=16 evalue=0.0 interpro_id=IPR018223 interpro_description=Argininosuccinate synthase, conserved site GO=Molecular Function: argininosuccinate synthase activity (GO:0004055), Molecular Function: ATP binding (GO:0005524), Biological Process: arginine biosynthetic process (GO:0006526))
ACD20_120_13

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15633..16970
DNA (1338bp) protein (446aa)
Argininosuccinate lyase n=3 Tax=Clostridium thermocellum RepID=ARLY_CLOTH (db=UNIREF evalue=0.0 bit_score=680.0 identity=73.24 coverage=97.9820627802691)
argininosuccinate lyase
argininosuccinate lyase
FUMARATE_LYASES (db=PatternScan db_id=PS00163 from=261 to=270 evalue=0.0 interpro_id=IPR020557 interpro_description=Fumarate lyase, conserved site GO=Molecular Function: catalytic activity (GO:0003824))
ACD20_120_14

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16998..17909
DNA (912bp) protein (304aa)
4-diphosphocytidyl-2C-methyl-D-erythritol kinase
seg (db=Seg db_id=seg from=101 to=116)
4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase (db=HMMPIR db_id=PIRSF010376 from=2 to=292 evalue=7.4e-87 interpro_id=IPR004424 interpro_description=4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO=Biological Process: terpenoid biosynthetic process (GO:0016114), Molecular Function: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity (GO:0050515))
ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D (db=HMMTigr db_id=TIGR00154 from=1 to=292 evalue=2.7e-61 interpro_id=IPR004424 interpro_description=4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO=Biological Process: terpenoid biosynthetic process (GO:0016114), Molecular Function: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity (GO:0050515))
ACD20_120_15

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comp(17900..18709)
DNA (810bp) protein (270aa)
seg (db=Seg db_id=seg from=6 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
seg (db=Seg db_id=seg from=28 to=40)
Sporulation related repeat (db=superfamily db_id=SSF110997 from=232 to=269 evalue=3.9e-06 interpro_id=IPR007730 interpro_description=Sporulation related domain)
ACD20_120_16

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comp(18715..19281)
DNA (567bp) protein (189aa)
hypothetical protein
DUF366 (db=HMMPfam db_id=PF04017 from=1 to=185 evalue=3.3e-62 interpro_id=IPR007162 interpro_description=Protein of unknown function DUF366)
Uncharacterised conserved protein, UCP006503 type (db=HMMPIR db_id=PIRSF006503 from=2 to=188 evalue=1.0e-43 interpro_id=IPR007162 interpro_description=Protein of unknown function DUF366)
Q3ADI4_CARHY_Q3ADI4; (db=BlastProDom db_id=PD022700 from=8 to=185 evalue=1.0e-37 interpro_id=IPR007162 interpro_description=Protein of unknown function DUF366)
ACD20_120_17

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comp(19684..20442)
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Vibrio alginolyticus 12G01 RepID=Q1VCN5_VIBAL (db=UNIREF evalue=5.0e-78 bit_score=294.0 identity=55.43 coverage=99.2094861660079)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE03473.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 17 items

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