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ACD20_175

Alias: ACD20_29020.6314.13

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_175_1

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comp(131..1357)
DNA (1227bp) protein (409aa)
Predicted GTPases n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A434_PELCD (db=UNIREF evalue=4.0e-162 bit_score=574.0 identity=64.86 coverage=99.2665036674817)
hydF; [FeFe]-hydrogenase maturation GTPase HydF
hydF; [FeFe]-hydrogenase maturation GTPase HydF
MSS1/TRME-RELATED GTP-BINDING PROTEIN (db=HMMPanther db_id=PTHR11649 from=5 to=358 evalue=2.8e-45)
ACD20_175_2

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1551..2882
DNA (1332bp) protein (444aa)
pyruvate carboxyltransferase family protein
pyruvate carboxyltransferase family protein
Pyruvate carboxyltransferase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBD6_ELUMP (db=UNIREF evalue=3.0e-176 bit_score=621.0 identity=73.84 coverage=91.8918918918919)
seg (db=Seg db_id=seg from=123 to=136)
Lysine biosynthesis (pyruvate pathway to lys biosyn) Jill Banfield (11/15/12)
ACD20_175_3

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2909..4210
DNA (1302bp) protein (434aa)
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=LEUC_ELUMP (db=UNIREF evalue=6.0e-171 bit_score=603.0 identity=72.42 coverage=95.852534562212)
seg (db=Seg db_id=seg from=355 to=366)
ACD20_175_4

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4426..4926
DNA (501bp) protein (167aa)
leuD; 3-isopropylmalate dehydratase small subunit
LEUD_arch: 3-isopropylmalate dehydratase, s (db=HMMTigr db_id=TIGR02087 from=5 to=160 evalue=2.5e-71 interpro_id=IPR011827 interpro_description=3-isopropylmalate dehydratase, small subunit, subgroup GO=Molecular Function: 3-isopropylmalate dehydratase activity (GO:0003861), Biological Process: leucine biosynthetic process (GO:0009098), Cellular Component: 3-isopropylmalate dehydratase complex (GO:0009316))
LeuD/IlvD-like (db=superfamily db_id=SSF52016 from=2 to=161 evalue=1.3e-48 interpro_id=IPR015928 interpro_description=Aconitase/3-isopropylmalate dehydratase, swivel GO=Biological Process: metabolic process (GO:0008152))
ACONITASE (db=HMMPanther db_id=PTHR11670 from=25 to=165 evalue=1.9e-46 interpro_id=IPR015937 interpro_description=Aconitase-like core GO=Biological Process: metabolic process (GO:0008152))
ACD20_175_5

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4938..5960
DNA (1023bp) protein (341aa)
isocitrate dehydrogenase (EC:1.1.1.41 1.1.1.42)
isocitrate dehydrogenase (EC:1.1.1.41 1.1.1.42)
Isocitrate/isopropylmalate dehydrogenase n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZ92_PELTS (db=UNIREF evalue=7.0e-112 bit_score=407.0 identity=63.04 coverage=94.1348973607038)
seg (db=Seg db_id=seg from=324 to=337)
Best hits to fermentative firmicutes. NAD+ not NADP+, cyanobacteria do not have NAD+ kind, apparently. blasted to genomes to confirm via COGE, best hit to synecoccus 33% ID kelly wrighton (11/15/12)
ACD20_175_6

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6063..6350
DNA (288bp) protein (96aa)
DUF1284 (db=HMMPfam db_id=PF06935 from=1 to=90 evalue=1.6e-17 interpro_id=IPR009702 interpro_description=Protein of unknown function DUF1284)
Uncharacterized protein {ECO:0000313|EMBL:EKE03582.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 6 items

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