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ACD20_68_4

Organism: ACD20

near complete RP 51 / 55 MC: 13 BSCG 50 / 51 MC: 4 ASCG 0 / 38
Location: comp(3298..4242)

Top 3 Functional Annotations

Value Algorithm Source
sig1; RNA polymerase sigma factor rpoD similarity KEGG
DB: KEGG
  • Identity: 37.5
  • Coverage: 296.0
  • Bit_score: 225
  • Evalue 2.20e-56
SIGMA70_1 (db=PatternScan db_id=PS00715 from=103 to=116 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 0.0
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=36 to=149 evalue=1.1e-40 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 1.10e-40

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Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 945
ATGAGAGAATTCATTGAAAAAGAGTCTGATAAAACTCACAAGGAAGATTGCTCTAATGCAGAGGTTTTAGCTTTTCAGGCCTGTCCTGTAAATCAAGAAGTCCACTATGCAGCTTTTGACGATGCAACAAAATCTTATCTGGCAAGAATACATCGAATTAAGCTATTAACACCCGCAGAAGAGATAGAGTTAGGTAAAAAAATAGCTAATGGTGATATTGTAGCCAAAAGAAAGCTGGTTCAGGCGAATTTGAGGTTAGTGGTAAGTATTGCCAAGAAATATATTAATAATAACCTACCGCTTATTGATATAATTCAGGAAGGAAACCTTGGACTAATGGTAGCTGCTGAAAAATACAACTATAAATTAGGCTTTAAATTCAGCACTTATGCTACCTGGTGGATAAAGCAGTCTATAAACAAAGCTGTTTCTGAGCAATCTCATAGTATGAAGATACCTGTATACATTCAGGAAACCCTTACTAAATTCTCAAAAGTTAAATCAGAGATGGAAAAATTATATAGCTGTCAGGTTGCAATAAAAGATGTAGCCGATAAATTAAGCATTCCTGAATTAAAAATAGAAAACTATTTAAATGCTTTAACCAAACCCATCTCTGTTGATGCCACATTTCAGCTACCTGACGGGAATGAAGCCAGTTTTTGCGAATTTCTGATTGACACTGATTACAAAGTTGATAAGCAGGCTGAGTTTGATTATTTAAAAAAAGATATAAGTAAAATTTTAGATACACTGAAAATCAGAGAGAAGGAAGTCATATCAATGAGGTTCGGCCTCAATAATTCCACAGGCAAGACTCTGGATGAGATTGGGAGAATTTACGGTGTAACGAAGGAATGCATCAGACAAACAGAACTCAGGGCTATTAAACACATGCGATCTGTTTGTCTGAAAGAAGACTTACTCGTGCACTACTTAAATTAA
PROTEIN sequence
Length: 315
MREFIEKESDKTHKEDCSNAEVLAFQACPVNQEVHYAAFDDATKSYLARIHRIKLLTPAEEIELGKKIANGDIVAKRKLVQANLRLVVSIAKKYINNNLPLIDIIQEGNLGLMVAAEKYNYKLGFKFSTYATWWIKQSINKAVSEQSHSMKIPVYIQETLTKFSKVKSEMEKLYSCQVAIKDVADKLSIPELKIENYLNALTKPISVDATFQLPDGNEASFCEFLIDTDYKVDKQAEFDYLKKDISKILDTLKIREKEVISMRFGLNNSTGKTLDEIGRIYGVTKECIRQTELRAIKHMRSVCLKEDLLVHYLN*