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ACD20_68

Alias: ACD20_1947.23987.15

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_68_1

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81..704
DNA (624bp) protein (208aa)
hypothetical protein (db=KEGG evalue=2.0e-09 bit_score=65.5 identity=30.32 coverage=68.75)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=20 to=38)
hypothetical protein alias=ACD20_1947.23987.15G0001,ACD20_1947.23987.15_1,ACD20_C00068G00001 id=19530 tax=ACD20 species=Desulfitobacterium hafniense genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_68_2

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1188..1772
DNA (585bp) protein (195aa)
maf protein
Predicted septum formation protein Maf (db=HMMPIR db_id=PIRSF006305 from=1 to=194 evalue=3.4e-62 interpro_id=IPR003697 interpro_description=Maf-like protein GO=Cellular Component: cytoplasm (GO:0005737))
Maf (db=HMMPfam db_id=PF02545 from=5 to=191 evalue=1.1e-59 interpro_id=IPR003697 interpro_description=Maf-like protein GO=Cellular Component: cytoplasm (GO:0005737))
maf: septum formation protein Maf (db=HMMTigr db_id=TIGR00172 from=3 to=187 evalue=4.4e-59 interpro_id=IPR003697 interpro_description=Maf-like protein GO=Cellular Component: cytoplasm (GO:0005737))
ACD20_68_3

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comp(1807..3078)
DNA (1272bp) protein (424aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
Ribosomal protein S1 n=3 Tax=Bifidobacteriaceae RepID=D6KU47_SCAIO (db=UNIREF evalue=7.0e-57 bit_score=225.0 identity=39.71 coverage=81.3679245283019)
seg (db=Seg db_id=seg from=377 to=393)
seg (db=Seg db_id=seg from=200 to=215)
ACD20_68_4

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comp(3298..4242)
DNA (945bp) protein (315aa)
sig1; RNA polymerase sigma factor rpoD
SIGMA70_1 (db=PatternScan db_id=PS00715 from=103 to=116 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=36 to=149 evalue=1.1e-40 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=46 to=148 evalue=2.1e-40)
ACD20_68_5

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4784..8863
DNA (4080bp) protein (1360aa)
helicase
coiled-coil (db=Coil db_id=coil from=428 to=463 evalue=NA)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=663 to=1337 evalue=5.6e-79)
UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER (db=HMMPanther db_id=PTHR11070 from=674 to=1305 evalue=8.3e-65 interpro_id=IPR000212 interpro_description=DNA helicase, UvrD/REP type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP-dependent DNA helicase activity (GO:0004003), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
ACD20_68_6

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8857..9027
DNA (171bp) protein (57aa)
8857..9027 + (rbs_motif=GGAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04096.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_68_7

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9141..9812
DNA (672bp) protein (224aa)
seg (db=Seg db_id=seg from=207 to=221)
Uncharacterized protein {ECO:0000313|EMBL:EKE04097.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_68_8

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comp(9870..10916)
DNA (1047bp) protein (349aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=20 to=29)
seg (db=Seg db_id=seg from=274 to=286)
seg (db=Seg db_id=seg from=302 to=333)
ACD20_68_9

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comp(11054..12028)
DNA (975bp) protein (325aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=303 to=312)
Uncharacterized protein {ECO:0000313|EMBL:EKE04099.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_68_10

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comp(12402..13160)
DNA (759bp) protein (253aa)
2-phosphosulfolactate phosphatase (EC:3.1.3.71)
Putative 2-phosphosulfolactate phosphatase n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MMC4_9BACT (db=UNIREF evalue=3.0e-30 bit_score=135.0 identity=35.57 coverage=94.0711462450593)
seg (db=Seg db_id=seg from=103 to=114)
2-ph_phosp (db=HMMPfam db_id=PF04029 from=15 to=248 evalue=2.7e-67 interpro_id=IPR005238 interpro_description=2-phosphosulpholactate phosphatase GO=Molecular Function: magnesium ion binding (GO:0000287), Biological Process: coenzyme M biosynthetic process (GO:0019295), Molecular Function: 2-phosphosulfolactate phosphatase activity (GO:0050532))
coenzyme M biosyn path: (2R)-2-phospho-3-sulfolactate + H2O = (2R)-3-sulfolactate + phosphate Jill Banfield (11/15/12)
ACD20_68_11

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13233..13976
DNA (744bp) protein (248aa)
molybdopterin-guanine dinucleotide biosynthesis protein MobB
Activating enzymes of the ubiquitin-like proteins (db=superfamily db_id=SSF69572 from=7 to=243 evalue=2.2e-80 interpro_id=IPR009036 interpro_description=Molybdenum cofactor biosynthesis, MoeB)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=3 to=243 evalue=5.0e-74 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: binding (GO:0005488), Biological Process: metabolic process (GO:0008152))
UBIQUITIN-ACTIVATING ENZYME E1 (db=HMMPanther db_id=PTHR10953 from=5 to=223 evalue=5.2e-60)
ACD20_68_12

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14001..14798
DNA (798bp) protein (266aa)
xylose isomerase domain-containing protein
AP endonuclease, family 2, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZRD9_9BACT (db=UNIREF evalue=8.0e-31 bit_score=137.0 identity=30.52 coverage=90.9774436090226)
Xylose isomerase-like (db=superfamily db_id=SSF51658 from=2 to=265 evalue=6.8e-33 interpro_id=IPR013022 interpro_description=Xylose isomerase-like, TIM barrel domain)
AP_endonuc_2 (db=HMMPfam db_id=PF01261 from=41 to=216 evalue=6.4e-19 interpro_id=IPR012307 interpro_description=Xylose isomerase, TIM barrel domain)
ACD20_68_13

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14803..15357
DNA (555bp) protein (185aa)
Isochorismatase hydrolase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GL61_THISH (db=UNIREF evalue=1.0e-37 bit_score=159.0 identity=42.44 coverage=91.3513513513514)
isochorismatase hydrolase
seg (db=Seg db_id=seg from=2 to=14)
no description (db=Gene3D db_id=G3DSA:3.40.50.850 from=6 to=184 evalue=1.4e-53 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD20_68_14

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comp(15829..16083)
DNA (255bp) protein (85aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=7 to=28 evalue=NA)
hypothetical protein; K07504 hypothetical protein alias=ACD20_1947.23987.15G0014,ACD20_1947.23987.15_14,ACD20_C00068G00014 id=19524 tax=ACD20 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE04083.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_68_15

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comp(16270..16956)
DNA (687bp) protein (229aa)
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
seg (db=Seg db_id=seg from=124 to=137)
seg (db=Seg db_id=seg from=47 to=60)
TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE/RESPONSE REGULATOR (INTESTINAL BACTERIA - BACTEROIDES THETAIOTAOMICRON) (db=HMMPanther db_id=PTHR23283:SF21 from=3 to=126 evalue=2.5e-39)
ACD20_68_16

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17163..19760
DNA (2598bp) protein (866aa)
PAS sensor histidine kinase domain protein
PAS sensor histidine kinase domain protein
Sensor protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SG95_HAHCH (db=UNIREF evalue=5.0e-89 bit_score=333.0 identity=32.35 coverage=65.0115473441109)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=26)
ACD20_68_17

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19742..20134
DNA (393bp) protein (131aa)
response regulator receiver protein
CheY-like (db=superfamily db_id=SSF52172 from=4 to=126 evalue=2.2e-32 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=7 to=121 evalue=2.5e-32 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=7 to=125 evalue=3.7e-29)
ACD20_68_18

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20127..20468
DNA (342bp) protein (114aa)
Histidine-containing phosphotransfer domain, HPT domain (db=superfamily db_id=SSF47226 from=10 to=113 evalue=5.3e-12 interpro_id=IPR008207 interpro_description=Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: signal transducer activity (GO:0004871))
Hpt (db=HMMPfam db_id=PF01627 from=19 to=112 evalue=3.8e-10 interpro_id=IPR008207 interpro_description=Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: signal transducer activity (GO:0004871))
no description (db=Gene3D db_id=G3DSA:1.20.120.160 from=15 to=110 evalue=4.7e-07)
HPT (db=ProfileScan db_id=PS50894 from=1 to=113 evalue=12.818 interpro_id=IPR008207 interpro_description=Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: signal transducer activity (GO:0004871))
ACD20_68_19

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20505..21017
DNA (513bp) protein (171aa)
DNA-binding response regulator
CheY-like (db=superfamily db_id=SSF52172 from=3 to=129 evalue=8.2e-30 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=6 to=118 evalue=1.7e-26 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=7 to=135 evalue=1.8e-25)
ACD20_68_20

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21043..22380
DNA (1338bp) protein (446aa)
phosphodiesterase
seg (db=Seg db_id=seg from=154 to=165)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=248 to=423 evalue=1.1e-26)
HD (db=HMMPfam db_id=PF01966 from=266 to=385 evalue=7.9e-14 interpro_id=IPR006674 interpro_description=Metal-dependent phosphohydrolase, HD subdomain)
ACD20_68_21

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22467..23843
DNA (1377bp) protein (459aa)
type IV pilus assembly protein PilB
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=48 to=450 evalue=7.8e-49)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=181 to=458 evalue=1.6e-47)
GSPII_E (db=HMMPfam db_id=PF00437 from=71 to=319 evalue=3.2e-22 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
Displaying 21 items

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