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MEL_C3_24_11

Organism: MEL.C3

partial RP 36 / 55 MC: 3 BSCG 39 / 51 ASCG 0 / 38
Location: comp(6451..7032)

Top 3 Functional Annotations

Value Algorithm Source
putative RNA polymerase factor sigma C similarity KEGG
DB: KEGG
  • Identity: 36.3
  • Coverage: 135.0
  • Bit_score: 98
  • Evalue 1.90e-18
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=28 to=189 evalue=7.4e-34 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 7.40e-34
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=121 to=191 evalue=5.1e-14 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 5.10e-14

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Taxonomy

Fusobacterium sp. CAG:815 → Melainabacteria → Bacteria

Sequences

DNA sequence
Length: 582
ATGATTTGGGTTTCCCAACTGATGAATATGGTTTTATACTTGTTGATTGAGTTTTATATTGAGAGAAAGTTTCTAATTAGTATGAATATTAAAAAAATTATTGAAAATAACCAGCAATACGTTAAAAATTTAATAAAAACTATTACAAATACACACAATAATGAAGATATTGAGCAGGAAGTTTATATAAAATTATGGAAAAATCATGATAAATATGAAGAAAACGGAAAATTTAAAAGTTGGATAAAAACAATTACATTAAATGCAACAAAAGATTTTCTCAAATCCAAACAAATTAAACAATCAAACATGTCAGTTAATGATGAGGATTTATTAAAAAACATACACGACACCAAATCGCATGTTGAAAATAAAATAATAAATCTTCAAACACGCAAACAAATAATAAATGCTATTGAAAACTTAAGTAAGAATCATAAAGAAGTTATAATTCTTTACGAGTTTTATAATCTATCATATGAAGATATTGCAAAAAAACTAAGCTGTCCGCTTGGCACAATTAAATCACGTATATACACTGCTAAAAAAATATTAGCACAAAATTTAAAAGACTTAATATAA
PROTEIN sequence
Length: 194
MIWVSQLMNMVLYLLIEFYIERKFLISMNIKKIIENNQQYVKNLIKTITNTHNNEDIEQEVYIKLWKNHDKYEENGKFKSWIKTITLNATKDFLKSKQIKQSNMSVNDEDLLKNIHDTKSHVENKIINLQTRKQIINAIENLSKNHKEVIILYEFYNLSYEDIAKKLSCPLGTIKSRIYTAKKILAQNLKDLI*