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MEL_C3_24_11 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
putative RNA polymerase factor sigma C similarity KEGG
DB: KEGG
36.3 135.0 98 1.90e-18 csq:CSCA_0824
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=28 to=189 evalue=7.4e-34 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
null null null 7.40e-34 csq:CSCA_0824
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=121 to=191 evalue=5.1e-14 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 5.10e-14 csq:CSCA_0824
(db=HMMPfam db_id=PF08281 from=133 to=184 evalue=2.3e-12 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 2.30e-12 csq:CSCA_0824
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=30 to=119 evalue=8.2e-12 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
null null null 8.20e-12 csq:CSCA_0824
(db=HMMPfam db_id=PF04542 from=34 to=97 evalue=5.0e-11 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 5.00e-11 csq:CSCA_0824
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=29 to=97 evalue=1.0e-07) iprscan interpro
DB: Gene3D
null null null 1.00e-07 csq:CSCA_0824
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CDE91486.1}; TaxID=1262901 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" s UNIPROT
DB: UniProtKB
51.8 166.0 171 8.60e-40 R7LTT0_9FUSO