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13_1_40cm_scaffold_13762

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_13762_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..668)
DNA (666bp) protein (222aa)
Enoyl-CoA hydratase id=3526421 bin=GWC2_Methylomirabilis_70_16 species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
enoyl-CoA hydratase Tax=GWC2_Rokubacteria_70_16_curated
enoyl-CoA hydratase
13_1_40cm_scaffold_13762_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(692..1474)
DNA (783bp) protein (261aa)
oxidoreductase (EC:1.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase id=1890936 bin=GWA2_Methylomirabilis_73_35 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase family protein
13_1_40cm_scaffold_13762_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1474..2238)
DNA (765bp) protein (255aa)
2-oxopent-4-enoate hydratase (EC:4.2.1.80) Tax=GWA2_Rokubacteria_73_35_curated
2-oxopent-4-enoate hydratase (EC:4.2.1.80)
4-oxalocrotonate decarboxylase id=1890939 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_13762_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2249..2599)
DNA (351bp) protein (117aa)
id=4117858 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=4117858 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_13762_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2627..3730)
DNA (1104bp) protein (368aa)
acaB-2; acetyl-CoA acetyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Propanoyl-CoA C-acyltransferase id=1890943 bin=GWA2_Methylomirabilis_73_35 species=Mycobacterium rhodesiae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acaB-2; acetyl-CoA acetyltransferase
13_1_40cm_scaffold_13762_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3804..4598)
DNA (795bp) protein (265aa)
abortive infection protein; K07052 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Abortive infection protein id=1890947 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
abortive infection protein
13_1_40cm_scaffold_13762_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4598..6244)
DNA (1647bp) protein (549aa)
cyclohexanecarboxylate-CoA ligase; K04116 cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-] Tax=GWC2_Rokubacteria_70_16_curated
AMP-dependent synthetase and ligase id=4748863 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cyclohexanecarboxylate-CoA ligase
13_1_40cm_scaffold_13762_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6262..7056)
DNA (795bp) protein (265aa)
short-chain dehydrogenase/reductase SDR Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Short-chain dehydrogenase/reductase SDR id=3880340 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_scaffold_13762_9
Brevibacillus brevis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7053..7814)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI000306889E
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAH46101.1}; TaxID=358681 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus brevis (strain
13_1_40cm_scaffold_13762_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7790..8893)
DNA (1104bp) protein (368aa)
acyl-CoA dehydrogenase domain-containing protein; K04117 cyclohexanecarboxyl-CoA dehydrogenase [EC:1.3.99.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl-CoA dehydrogenase domain protein id=4748892 bin=GWC2_Methylomirabilis_70_16 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_scaffold_13762_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8906..9766)
DNA (861bp) protein (287aa)
MmgE/PrpD family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627809 bin=bin7_NC10_sister species=Azoarcus toluclasticus genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_13762_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10221..11126)
DNA (906bp) protein (302aa)
Putative uncharacterized protein id=3955123 bin=GWA2_Methylomirabilis_73_35 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_13762_13
unknown

Not on your lists

comp(11123..11479)
DNA (357bp) protein (119aa)

This feature has no annotations

13_1_40cm_scaffold_13762_trna_1
unknown

Not on your lists

comp(11518..11590)
DNA (73bp)
transferRNA
13_1_40cm_scaffold_13762_14
unknown

Not on your lists

12174..12383
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_40cm_scaffold_13762_15
Corynebacterium aurimucosum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12727..13737)
DNA (1011bp) protein (337aa)
PREDICTED: calphotin-like n=1 Tax=Danio rerio RepID=UPI0003837F63
Fe-S oxidoreductase
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:ACP33930.1}; TaxID=548476 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium aurimucosu
13_1_40cm_scaffold_13762_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13888..14601)
DNA (714bp) protein (238aa)
Branched-chain amino acid ABC transporter,ATP-binding component (LivF-like) id=5022299 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter,ATP-binding component (LivF-like) Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter ATP-binding protein
13_1_40cm_scaffold_13762_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14598..14798)
DNA (201bp) protein (67aa)
Branched-chain amino acid ABC transporter ATP-binding protein id=5022300 bin=GWA2_Methylomirabilis_73_35 species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livG3; branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
livG1; putative branched-chain amino acids ABC transporter ATP-binding protein
13_1_40cm_scaffold_13762_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15294..15506)
DNA (213bp) protein (71aa)
branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Inner-membrane translocator id=5022301 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter permease
13_1_40cm_scaffold_13762_19
unknown

Not on your lists

15827..15967
DNA (141bp) protein (47aa)

This feature has no annotations

13_1_40cm_scaffold_13762_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16214..17089)
DNA (876bp) protein (292aa)
Inner-membrane translocator id=5022302 bin=GWA2_Methylomirabilis_73_35 species=Thermus sp. CCB_US3_UF1 genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
inner-membrane translocator
13_1_40cm_scaffold_13762_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(17105..17545)
DNA (441bp) protein (147aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=14625570 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=bin7_NC10_sister organism_group=NC10
Displaying 22 items

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