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13_1_40cm_scaffold_1469

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1469_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(89..523)
DNA (435bp) protein (145aa)
MaoC-like dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl dehydratase id=2783141 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC-like dehydratase
13_1_40cm_scaffold_1469_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(537..992)
DNA (456bp) protein (152aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
MaoC-like dehydratase id=2783137 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC-like dehydratase
13_1_40cm_scaffold_1469_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(997..1392)
DNA (396bp) protein (132aa)
thioesterase family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Thioesterase superfamily protein id=2783134 bin=GWF2_Methylomirabilis_70_14 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1469_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1404..2135)
DNA (732bp) protein (244aa)
hypothetical protein; K07090 Tax=GWC2_Rokubacteria_70_16_curated
Putative membrane protein id=4911921 bin=GWC2_Methylomirabilis_70_16 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1469_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2155..3327
DNA (1173bp) protein (391aa)
major facilitator transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
EmrB/QacA family drug resistance transporter id=14625974 bin=bin7_NC10_sister species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator superfamily transporter
13_1_40cm_scaffold_1469_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3397..4434
DNA (1038bp) protein (346aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626596 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1469_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4431..4712
DNA (282bp) protein (94aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4905363 bin=GWA2_Methylomirabilis_73_35 species=Saccharomonospora marina genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1469_8
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

4734..4961
DNA (228bp) protein (76aa)
hypothetical protein
Uncharacterized protein id=4905364 bin=GWA2_Methylomirabilis_73_35 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_1_40cm_scaffold_1469_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5192..5992
DNA (801bp) protein (267aa)
hypothetical protein; K07019 Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein; K07019 id=14626593 bin=bin7_NC10_sister species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase fold protein
13_1_40cm_scaffold_1469_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5994..7301
DNA (1308bp) protein (436aa)
fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (EC:5.2.1.8)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00036FA4B3
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_1469_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7298..7930
DNA (633bp) protein (211aa)
ushA; 5'-nucleotidase (EC:3.1.3.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5'-nucleotidase id=4178156 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative 5`-nucleotidase
13_1_40cm_scaffold_1469_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7942..8817
DNA (876bp) protein (292aa)
ushA; 5'-nucleotidase (EC:3.1.3.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ushA; 5'-nucleotidase (EC:3.1.3.5)
5'-nucleotidase n=1 Tax=uncultured prokaryote RepID=H5SKN9_9ZZZZ
13_1_40cm_scaffold_1469_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8983..9429
DNA (447bp) protein (149aa)
Two component transcriptional regulator id=4905366 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
13_1_40cm_scaffold_1469_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9563..11395)
DNA (1833bp) protein (611aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IM10_METNO
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_1469_15
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11474..12991)
DNA (1518bp) protein (506aa)
peptide ABC transporter substrate-binding protein (EC:3.6.3.24)
peptide ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
Peptide ABC transporter substrate-binding protein id=4797023 bin=GWC2_Methylomirabilis_70_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_1469_16
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13297..15093)
DNA (1797bp) protein (599aa)
Peptide ABC transporter substrate-binding protein id=4797023 bin=GWC2_Methylomirabilis_70_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptide ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
peptide ABC transporter substrate-binding protein
13_1_40cm_scaffold_1469_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15302..15958
DNA (657bp) protein (219aa)
resA; thiol-disulfide oxidoreductase ResA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Thiol-disulfide oxidoreductase id=3666472 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
resA; thiol-disulfide oxidoreductase resA
13_1_40cm_scaffold_1469_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15955..16695
DNA (741bp) protein (247aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytochrome c biogenesis protein CcdA id=3666473 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccdA; cytochrome c biogenesis protein CcdA
13_1_40cm_scaffold_1469_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16700..17602
DNA (903bp) protein (301aa)
homoserine kinase; K00872 homoserine kinase [EC:2.7.1.39] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Homoserine kinase id=3666474 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
homoserine kinase
13_1_40cm_scaffold_1469_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18403..18828
DNA (426bp) protein (142aa)
Major facilitator superfamily MFS_1 n=1 Tax=alpha proteobacterium BAL199 RepID=A8TLP8_9PROT
Major facilitator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Major facilitator
13_1_40cm_scaffold_1469_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18862..20010
DNA (1149bp) protein (383aa)
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13)
2'-deoxycytidine 5'-triphosphate deaminase id=3666475 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1469_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20073..20273
DNA (201bp) protein (67aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Prokaryotic ubiquitin-like protein Pup id=4797071 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1469_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20275..20484
DNA (210bp) protein (70aa)
Regulatory protein, FmdB family n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QF48_DESB2
FmdB family regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
FmdB family regulatory protein
13_1_40cm_scaffold_1469_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20513..21076
DNA (564bp) protein (188aa)
LysR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, LysR family id=3666476 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LysR family transcriptional regulator
Displaying 24 items

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