ggKbase home page

13_1_40cm_scaffold_16163

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_16163_trna_1
unknown

Not on your lists

comp(4..76)
DNA (73bp)
transferRNA
13_1_40cm_scaffold_16163_1

Not on your lists

233..781
DNA (549bp) protein (183aa)
Cystathionine beta-synthase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5S9E2_9BACT
Pyridoxal-phosphate dependent enzyme {ECO:0000313|EMBL:AIA14203.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cystathionine beta-synthase
13_1_40cm_scaffold_16163_2

Not on your lists

778..1563
DNA (786bp) protein (262aa)
Cystathionine beta-synthase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5S9E2_9BACT
Pyridoxal-phosphate dependent enzyme {ECO:0000313|EMBL:AIA16184.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cystathionine beta-synthase
13_1_40cm_scaffold_16163_3

Not on your lists

comp(1682..2170)
DNA (489bp) protein (163aa)
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Enterococcus saccharolyticus ATCC 43076 RepID=S0NH60_9ENTE
Dihydrofolate reductase {ECO:0000313|EMBL:AIA19043.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_1_40cm_scaffold_16163_4

Not on your lists

comp(2328..3176)
DNA (849bp) protein (283aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:000
Thymidylate synthase n=1 Tax=Psychrobacter sp. (strain PRwf-1) RepID=TYSY_PSYWF
thyA; thymidylate synthase
13_1_40cm_scaffold_16163_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3212..4510)
DNA (1299bp) protein (433aa)
Cysteine desulfurase family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI18_9BACT
cysteine desulfurase family protein
Cysteine desulfurase family protein {ECO:0000313|EMBL:AHG91877.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_16163_6
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

4897..5073
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TLT2_9CHLR
Uncharacterized protein Tax=RBG_16_Thaumarchaeota_49_8_curated
13_1_40cm_scaffold_16163_7
unknown

Not on your lists

5179..5463
DNA (285bp) protein (95aa)

This feature has no annotations

13_1_40cm_scaffold_16163_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

5426..5713
DNA (288bp) protein (96aa)
Molecular chaperone (Small heat shock protein) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGI8_SINAD
Heat shock protein Hsp20 {ECO:0000313|EMBL:CDM66412.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
molecular chaperone
13_1_40cm_scaffold_16163_9

Not on your lists

5717..5920
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium CSLG7 RepID=G4WV28_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AEQ20280.1}; TaxID=1091577 species="Bacteria; environmental samples.;" source="uncultured bacterium CSLG7.;"
hypothetical protein
13_1_40cm_scaffold_16163_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6119..7129
DNA (1011bp) protein (337aa)
Zinc-binding alcohol dehydrogenase family protein {ECO:0000313|EMBL:CDM64523.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CDM64523.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4;
zinc-binding alcohol dehydrogenase family protein (EC:1.1.1.1)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000379060A
13_1_40cm_scaffold_16163_11
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

7688..8818
DNA (1131bp) protein (377aa)
peptidase M50 Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
hypothetical protein id=14626212 bin=bin7_NC10_sister species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_16163_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8818..10173
DNA (1356bp) protein (452aa)
ABC-1 domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9Q8_9BACT
ABC-1 domain protein {ECO:0000313|EMBL:EEF63206.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosph
hypothetical protein
13_1_40cm_scaffold_16163_13
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10170..10454
DNA (285bp) protein (95aa)
Putative unusual protein kinase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CAZ3_DESTA
putative unusual protein kinase
Putative unusual protein kinase {ECO:0000313|EMBL:AFM26734.1}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfo
13_1_40cm_scaffold_16163_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10593..11435
DNA (843bp) protein (281aa)
Nucleotide-binding protein PYK22_02206 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatog
UPF0042 nucleotide-binding protein AciPR4_1305 id=4735641 bin=GWC2_Nitrospirae_57_13 species=Terriglobus saanensis genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
13_1_40cm_scaffold_16163_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

11456..11908
DNA (453bp) protein (151aa)
Phosphotransferase system, mannose/fructose-specific component IIA {ECO:0000313|EMBL:CDM66195.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CDM66195.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacter
PTS system transporter subunit IIA (EC:2.7.1.69)
PTS system IIA component n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGJ3_CHLTF
13_1_40cm_scaffold_16163_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12056..13285
DNA (1230bp) protein (410aa)
Periplasmic protein involved in polysaccharide export {ECO:0000313|EMBL:CDM66198.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas meth
13_1_40cm_scaffold_16163_17
unknown

Not on your lists

13390..13782
DNA (393bp) protein (131aa)

This feature has no annotations

13_1_40cm_scaffold_16163_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

13862..14374
DNA (513bp) protein (171aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66200.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_scaffold_16163_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

15380..15658
DNA (279bp) protein (93aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66201.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_scaffold_16163_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(15985..17436)
DNA (1452bp) protein (484aa)
Membrane protein, major facilitator superfamily n=2 Tax=Geobacter metallireducens RepID=Q39QP0_GEOMG
Sugar phosphate permease {ECO:0000313|EMBL:CDM64214.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
major facilitator superfamily membrane protein
13_1_40cm_scaffold_16163_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(17420..18157)
DNA (738bp) protein (246aa)
Phosphoglycerate mutase {ECO:0000313|EMBL:CDM64215.1}; EC=5.4.2.- {ECO:0000313|EMBL:CDM64215.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyr
Metalloenzyme domain protein n=1 Tax=Acetonema longum DSM 6540 RepID=F7NNF1_9FIRM
phosphoglyceromutase
Displaying 22 items

View Taxonomy