ggKbase home page

13_1_40cm_scaffold_1826

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1826_1
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(3..665)
DNA (663bp) protein (221aa)
putative glycosidase (EC:3.2.1.-) Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Amylopullulanase id=4319235 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
glycoside hydrolase family 57
13_1_40cm_scaffold_1826_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(801..1331)
DNA (531bp) protein (177aa)
putative glycosidase (EC:3.2.1.-) Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Glycoside hydrolase, family 57 n=1 Tax=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) RepID=B5YA07_COPPD
glycoside hydrolase family protein
13_1_40cm_scaffold_1826_3
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1328..2608)
DNA (1281bp) protein (427aa)
lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=105559 species="Bacteria; Proteobac
Lysine--tRNA ligase n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K686_NITWC
13_1_40cm_scaffold_1826_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(2757..3224)
DNA (468bp) protein (156aa)
GreA/GreB family elongation factor; K03624 transcription elongation factor GreA Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Transcription elongation factor GreA id=4786768 bin=GWC2_Chloroflexi_73_18 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
transcription elongation factor GreA
13_1_40cm_scaffold_1826_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(3394..5400)
DNA (2007bp) protein (669aa)
penicillin-binding protein 2 (EC:2.4.1.129)
Penicillin-binding protein 2 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C6L1_SPHTD
penicillin-binding protein 2; K05515 penicillin-binding protein 2 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_scaffold_1826_6
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(5437..6969)
DNA (1533bp) protein (511aa)
ggt; gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase {ECO:0000313|EMBL:ACM04943.1}; EC=2.3.2.2 {ECO:0000313|EMBL:ACM04943.1};; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.
Gamma-glutamyltransferase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KYQ4_THERP
13_1_40cm_scaffold_1826_7
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(6986..7870)
DNA (885bp) protein (295aa)
protease do (EC:3.4.21.-)
Protease do n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L3F0_THERP
peptidase S1 and S6, chymotrypsin/Hap Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_scaffold_1826_8
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(7876..8391)
DNA (516bp) protein (172aa)
hypothetical protein id=14630516 bin=bin8_Chloro species=Saccharothrix espanaensis genus=Saccharothrix taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein Tax=CSP1_4_Chloroflexi
hypothetical protein
13_1_40cm_scaffold_1826_9
unknown

Not on your lists

comp(8543..8935)
DNA (393bp) protein (131aa)

This feature has no annotations

13_1_40cm_scaffold_1826_10
unknown

Not on your lists

comp(8935..9435)
DNA (501bp) protein (167aa)

This feature has no annotations

13_1_40cm_scaffold_1826_11
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(9432..9926)
DNA (495bp) protein (165aa)
N-acetyltransferase GCN5; K00619 amino-acid N-acetyltransferase [EC:2.3.1.1] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
acetyltransferase (EC:2.3.1.1)
Amino-acid acetyltransferase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PY29_METMA
13_1_40cm_scaffold_1826_12
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

Not on your lists

comp(10188..11576)
DNA (1389bp) protein (463aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:S
Argininosuccinate lyase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A939_THEID
argininosuccinate lyase
13_1_40cm_scaffold_1826_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(11586..12899)
DNA (1314bp) protein (438aa)
argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TDM0_9CHLR
13_1_40cm_scaffold_1826_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(12892..13386)
DNA (495bp) protein (165aa)
arginine repressor ArgR; K03402 transcriptional regulator of arginine metabolism Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Arginine repressor id=4786769 bin=GWC2_Chloroflexi_73_18 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
arginine repressor
13_1_40cm_scaffold_1826_15
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(13386..14159)
DNA (774bp) protein (258aa)
argB; acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
acetylglutamate kinase n=1 Tax=Desulfovibrio desulfuricans RepID=UPI0003B5DC46
acetylglutamate kinase
13_1_40cm_scaffold_1826_16
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(14209..14697)
DNA (489bp) protein (163aa)
argJ; arginine biosynthesis bifunctional protein ArgJ; K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Deinococcus geothermalis (strain DSM 11300) RepID=Q1J0E0_DEIGD
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase
13_1_40cm_scaffold_1826_17
unknown

Not on your lists

14757..15014
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_scaffold_1826_18
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(15151..16251)
DNA (1101bp) protein (367aa)
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1E1_DEHLB
13_1_40cm_scaffold_1826_19
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(16315..17340)
DNA (1026bp) protein (342aa)
GCN5-related N-acetyltransferase n=1 Tax=Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) RepID=D3PKF7_MEIRD
N-acetyltransferase GCN5 Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
N-acetyltransferase GCN5
13_1_40cm_scaffold_1826_20
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

17393..18439
DNA (1047bp) protein (349aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:3.5.4.26 1.1.1.193); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.
DeoR faimly transcriptional regulator
Riboflavin biosynthesis protein RibD id=3442915 bin=GWC2_Deltaproteobacteria_56_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
13_1_40cm_scaffold_1826_21
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18503..19606
DNA (1104bp) protein (368aa)
Transporter, major facilitator family n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FMC6_STIAD
transporter
Major facilitator transporter {ECO:0000313|EMBL:KFA88762.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" sour
13_1_40cm_scaffold_1826_22
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(19578..20933)
DNA (1356bp) protein (452aa)
PHP domain protein n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YXB6_9THEM
PHP domain-containing protein Tax=RBG_16_Chloroflexi_48_8_curated
PHP domain-containing protein
13_1_40cm_scaffold_1826_23
Thermofilum sp. 1807-2, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(20930..21991)
DNA (1062bp) protein (354aa)
Carbohydrate ABC transporter ATP-binding protein, CUT1 family n=1 Tax=Ignisphaera aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1) RepID=E0SSX2_IGNAA
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:AKG38622.1}; TaxID=1550241 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.;" source="Thermofilu
sugar ABC transporter ATP-binding protein
13_1_40cm_scaffold_1826_24
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(21994..22872)
DNA (879bp) protein (293aa)
ABC-type sugar transport system, permease component id=4767711 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ABC transporter permease; K02026 multiple sugar transport system permease protein Tax=GWC2_RIF_CHLX_73_18_curated
hypothetical protein
13_1_40cm_scaffold_1826_25
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22869..23750)
DNA (882bp) protein (294aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QFV8_CATAD
binding-protein-dependent transporters inner membrane component
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein Tax=RBG_13_Deltaproteobacteria_61_14_curated
13_1_40cm_scaffold_1826_26

Not on your lists

comp(23787..24200)
DNA (414bp) protein (138aa)
Two component transcriptional regulator, LuxR family n=3 Tax=mine drainage metagenome RepID=T0Z142_9ZZZZ
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EQD37922.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenom
two-component system response regulator
13_1_40cm_scaffold_1826_27
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24275..24781)
DNA (507bp) protein (169aa)
Glycerophosphodiester phosphodiesterase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67LK3_SYMTH
glycerophosphodiester phosphodiesterase
Glycerophosphodiester phosphodiesterase {ECO:0000313|EMBL:BAD41443.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacte
Displaying 27 items

View Taxonomy