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13_1_40cm_scaffold_1858

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1858_1
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(3..491)
DNA (489bp) protein (163aa)
Transcriptional regulator, AraC family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RF96_PHEZH
AraC family transcriptional regulator Tax=RBG_16_Chloroflexi_54_18_curated
AraC family transcriptional regulator
13_1_40cm_scaffold_1858_2
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

808..2004
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TZP7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP62234.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
major facilitator transporter
13_1_40cm_scaffold_1858_3
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2026..2328)
DNA (303bp) protein (101aa)
CTP synthase (EC:6.3.4.2)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI000377EB52
CTP synthase {ECO:0000313|EMBL:KHD32510.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.
13_1_40cm_scaffold_1858_4
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2479..2742)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Pseudomonas syringae RepID=UPI0001E2A091
hypothetical protein
hypothetical protein Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
13_1_40cm_scaffold_1858_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2797..3747)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000360B729
Uncharacterized protein {ECO:0000313|EMBL:ETW99130.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase-like protein
13_1_40cm_scaffold_1858_6
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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3830..5038
DNA (1209bp) protein (403aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX00467.1}; Flags: Fragment;; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheone
Acyl-CoA dehydrogenase domain protein id=4347745 bin=GWC2_Methylomirabilis_70_16 species=marine gamma proteobacterium HTCC2143 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_scaffold_1858_7
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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5040..6203
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FIW6_DESAA
Uncharacterized protein {ECO:0000313|EMBL:ETX04111.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_scaffold_1858_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6446..7879
DNA (1434bp) protein (478aa)
putative two-component histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Histidine kinase id=1767179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase
13_1_40cm_scaffold_1858_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

8117..9109
DNA (993bp) protein (331aa)
two component, sigma54 specific, Fis family transcriptional regulator id=14627680 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
two component, sigma54 specific, Fis family transcriptional regulator Tax=CSP1_6_Rokubacteria
two component sigma-54 specific Fis family transcriptional regulator
13_1_40cm_scaffold_1858_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9169..9654
DNA (486bp) protein (162aa)
putative competence-damaged protein, CinA like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Competence/damage-inducible protein cinA id=4829158 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative competence-damaged protein, CinA like protein
13_1_40cm_scaffold_1858_11
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

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9669..10403
DNA (735bp) protein (245aa)
Tax=BJP_IG2069_Chloroflexi_70_12
13_1_40cm_scaffold_1858_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10625..11452)
DNA (828bp) protein (276aa)
putative hybrid sensor histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative Hybrid sensor histidine kinase id=3368251 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor hybrid histidine kinase
13_1_40cm_scaffold_1858_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11705..13600)
DNA (1896bp) protein (632aa)
two component system sensor histidine kinase (EC:2.7.13.3) Tax=GWA2_Rokubacteria_73_35_curated
two component system sensor histidine kinase (EC:2.7.13.3)
Two component system sensor histidine kinase id=3368252 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1858_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13597..15195)
DNA (1599bp) protein (533aa)
ABC-type dipeptide transport system, periplasmic component Tax=GWA2_Rokubacteria_73_35_curated
ABC-type dipeptide transport system, periplasmic component id=2654072 bin=GWC2_Methylomirabilis_70_24 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC-type dipeptide transport system, periplasmic component
13_1_40cm_scaffold_1858_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15224..15367)
DNA (144bp) protein (48aa)
id=4571218 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_1858_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15577..16956)
DNA (1380bp) protein (460aa)
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component system response regulator, sigma54-specific id=4571215 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component system response regulator, sigma54-specific
13_1_40cm_scaffold_1858_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17118..18644
DNA (1527bp) protein (509aa)
Mg chelatase subunit ChlI; K07391 magnesium chelatase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulator id=14625658 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
comM; competence ATPase ComM
13_1_40cm_scaffold_1858_18
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18712..18966)
DNA (255bp) protein (85aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP49214.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
id=14431409 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
13_1_40cm_scaffold_1858_19
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18987..19226)
DNA (240bp) protein (80aa)
hypothetical protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
hypothetical protein id=14431410 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
13_1_40cm_scaffold_1858_20
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19686..20477
DNA (792bp) protein (264aa)
alpha/beta hydrolase fold family protein
Alpha/beta hydrolase fold family protein {ECO:0000313|EMBL:KGC13330.1}; TaxID=13373 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei
putative hydrolase protein id=14629277 bin=bin8_Chloro species=Rhizobium etli genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
13_1_40cm_scaffold_1858_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21229..23622)
DNA (2394bp) protein (798aa)
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) id=14625663 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53)
13_1_40cm_scaffold_1858_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23643..24032)
DNA (390bp) protein (130aa)
Transcriptional regulator id=3544313 bin=GWA2_Methylomirabilis_73_35 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator; K13640 MerR family transcriptional regulator, heat shock protein HspR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulator
13_1_40cm_scaffold_1858_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24029..24916)
DNA (888bp) protein (296aa)
Zn finger domain-containing DnaJ-class molecular chaperone; K03686 molecular chaperone DnaJ Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DnaJ-class molecular chaperone with C-terminal Zn finger domain id=3544317 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Zn finger domain-containing DnaJ-class molecular chaperone
13_1_40cm_scaffold_1858_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(24924..26837)
DNA (1914bp) protein (638aa)
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) id=14625666 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)
13_1_40cm_scaffold_1858_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26921..27397)
DNA (477bp) protein (159aa)
Heat shock protein Hsp20 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Heat shock protein Hsp20 id=4311462 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Heat shock protein Hsp20
13_1_40cm_scaffold_1858_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27579..28211
DNA (633bp) protein (211aa)
hypothetical protein id=4311463 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_1858_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(28195..28578)
DNA (384bp) protein (128aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4311464 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1858_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

28640..29449
DNA (810bp) protein (270aa)
protein mazG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein mazG id=4311465 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein mazG
13_1_40cm_scaffold_1858_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

29446..29982
DNA (537bp) protein (179aa)
phosphatase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Predicted phosphatase id=4311466 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphatase
13_1_40cm_scaffold_1858_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

30115..31647
DNA (1533bp) protein (511aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV-A pilus assembly ATPase PilB id=3773045 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type II secretion system protein E
Displaying items 1-30 of 31 in total

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