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13_1_40cm_scaffold_1887

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1887_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2..148
DNA (147bp) protein (49aa)
Import inner membrane translocase, subunit Tim44 id=4379998 bin=GWA2_Methylomirabilis_73_35 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
import inner membrane translocase subunit Tim44 Tax=GWA2_Rokubacteria_73_35_curated
import inner membrane translocase subunit Tim44
13_1_40cm_scaffold_1887_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

168..1799
DNA (1632bp) protein (544aa)
AsmA family protein; K07289 AsmA protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AsmA family protein id=4379996 bin=GWA2_Methylomirabilis_73_35 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_1887_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1796..2632)
DNA (837bp) protein (279aa)
UbiE/COQ5 family methlytransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methylase involved in ubiquinone/menaquinone biosynthesis id=4379994 bin=GWA2_Methylomirabilis_73_35 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type 11 methyltransferase
13_1_40cm_scaffold_1887_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2692..3822
DNA (1131bp) protein (377aa)
citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] Tax=GWA2_Rokubacteria_73_35_curated
2-methylcitrate synthase/citrate synthase II (EC:2.3.3.1)
Citrate synthase id=4379992 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1887_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3830..4633
DNA (804bp) protein (268aa)
epsH; putative glycosyltransferase EpsH (EC:2.4.-.-)
Glycosyl transferase 2 family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycosyl transferase 2 family protein id=4379990 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1887_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4630..5793
DNA (1164bp) protein (388aa)
Oxidoreductase domain protein id=3024538 bin=GWC2_Methylomirabilis_70_16 species=Tepidanaerobacter acetatoxydans genus=Tepidanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Oxidoreductase domain protein Tax=GWA2_Rokubacteria_73_35_curated
Oxidoreductase domain protein
13_1_40cm_scaffold_1887_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5790..6647
DNA (858bp) protein (286aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase id=3024534 bin=GWC2_Methylomirabilis_70_16 species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_1887_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6644..7246
DNA (603bp) protein (201aa)
Putative uncharacterized protein id=3024532 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K06966 Tax=GWA2_Rokubacteria_73_35_curated
lysine decarboxylase
13_1_40cm_scaffold_1887_9
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

7319..8041
DNA (723bp) protein (241aa)
Putative anti-sigma regulatory factor, serine/threonine protein kinase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZ92_CONWI
anti-sigma regulatory factor, serine/threonine protein kinase
Putative anti-sigma regulatory factor, serine/threonine protein kinase {ECO:0000313|EMBL:ADB51857.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacter
13_1_40cm_scaffold_1887_10
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8121..8621)
DNA (501bp) protein (167aa)
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8DB27_HALXS
5-formyltetrahydrofolate cyclo-ligase
5-formyltetrahydrofolate cyclo-ligase {ECO:0000313|EMBL:AEH38245.1}; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halopiger.;" source="Halopiger xanaduensis
13_1_40cm_scaffold_1887_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8855..9940)
DNA (1086bp) protein (362aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3024530 bin=GWC2_Methylomirabilis_70_16 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1887_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9952..10317
DNA (366bp) protein (122aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4379979 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1887_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10387..10569
DNA (183bp) protein (61aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4379977 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1887_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10569..11324
DNA (756bp) protein (252aa)
Periplasmic binding protein id=4379975 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic binding protein Tax=GWA2_Rokubacteria_73_35_curated
periplasmic binding protein
13_1_40cm_scaffold_1887_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11308..11460)
DNA (153bp) protein (51aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4379973 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1887_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11464..11925)
DNA (462bp) protein (154aa)
endoribonuclease L-PSP (EC:3.1.-.-)
transcription regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Endoribonuclease L-PSP id=4379943 bin=GWA2_Methylomirabilis_73_35 species=Flavobacteria bacterium MS024-2A genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1887_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11970..12782
DNA (813bp) protein (271aa)
NUDIX hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NTP pyrophosphohydrolases including oxidative damage repair enzymes id=4379942 bin=GWA2_Methylomirabilis_73_35 species=uncultured gamma proteobacterium HF4000_19M20 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NUDIX hydrolase
13_1_40cm_scaffold_1887_18
Pseudomonas viridiflava, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12830..13324)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CFII64 RepID=S6II16_9PSED
Strain LMCA8 contig_63, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27440.1}; TaxID=33069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
hypothetical protein
13_1_40cm_scaffold_1887_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13321..13680)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI00029A5C28
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hypothetical protein
13_1_40cm_scaffold_1887_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13694..14935)
DNA (1242bp) protein (414aa)
crotonyl-CoA reductase; K14446 crotonyl-CoA carboxylase/reductase [EC:1.3.1.85] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Crotonyl-CoA reductase id=3646800 bin=GWC2_Methylomirabilis_70_16 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
crotonyl-CoA reductase
13_1_40cm_scaffold_1887_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14932..15948)
DNA (1017bp) protein (339aa)
luciferase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Luciferase family protein id=3646803 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
luciferase family protein
13_1_40cm_scaffold_1887_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15989..16417)
DNA (429bp) protein (143aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627394 bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1887_23
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(16444..17799)
DNA (1356bp) protein (452aa)
Mate efflux family protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C3N2_9BURK
putative MATE efflux family protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
mate efflux family protein
13_1_40cm_scaffold_1887_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17861..18373
DNA (513bp) protein (171aa)
Transcriptional regulator, HxlR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Y7_9BACT
HxlR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
HxlR family transcriptional regulator
13_1_40cm_scaffold_1887_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(18315..19346)
DNA (1032bp) protein (344aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
2-nitropropane dioxygenase NPD n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D0Y5_PAESJ
2-nitropropane dioxygenase NPD
Displaying 25 items

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