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13_1_40cm_scaffold_1895

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1895_1
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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3..377
DNA (375bp) protein (125aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=3362970 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1895_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

465..1514
DNA (1050bp) protein (350aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627009 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1895_3
unknown

Not on your lists

comp(1508..1717)
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_40cm_scaffold_1895_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(1751..1942)
DNA (192bp) protein (64aa)
50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L28 id=3362966 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L28
13_1_40cm_scaffold_1895_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2008..4098
DNA (2091bp) protein (697aa)
recG; ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent DNA helicase RecG id=3362965 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recG; ATP-dependent DNA helicase RecG
13_1_40cm_scaffold_1895_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4453..4911
DNA (459bp) protein (153aa)
Methyltransferase id=3362964 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase Tax=GWA2_Rokubacteria_73_35_curated
putative methyltransferase
13_1_40cm_scaffold_1895_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4921..5406
DNA (486bp) protein (162aa)
pantetheine-phosphate adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phosphopantetheine adenylyltransferase id=3362963 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphopantetheine adenylyltransferase
13_1_40cm_scaffold_1895_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5438..6637
DNA (1200bp) protein (400aa)
aspartate aminotransferase (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1] Tax=GWA2_Rokubacteria_73_35_curated
aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase A (AspAT) id=2537553 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_1895_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6697..7137
DNA (441bp) protein (147aa)
carbon monoxide dehydrogenase subunit G; K09386 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Carbon monoxide dehydrogenase subunit G id=3362961 bin=GWA2_Methylomirabilis_73_35 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbon monoxide dehydrogenase subunit G
13_1_40cm_scaffold_1895_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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7273..8601
DNA (1329bp) protein (443aa)
Phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=GWA2_Rokubacteria_73_35_curated
Phenylacetate--CoA ligase (EC:6.2.1.30)
Phenylacetate--CoA ligase id=4585789 bin=GWF2_Methylomirabilis_70_14 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1895_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8598..9626
DNA (1029bp) protein (343aa)
putative NAD-dependent alcohol dehydrogenase (EC:1.1.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative NAD-dependent alcohol dehydrogenase (EC:1.1.1.1)
Putative NAD-dependent alcohol dehydrogenase id=3362960 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1895_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9623..11050
DNA (1428bp) protein (476aa)
menE1; 2-succinylbenzoate--CoA ligase (EC:6.2.1.26) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
menE1; 2-succinylbenzoate--CoA ligase (EC:6.2.1.26)
AMP-dependent synthetase and ligase id=3362959 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1895_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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11047..11814
DNA (768bp) protein (256aa)
Enoyl-CoA hydratase/isomerase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Enoyl-CoA hydratase/isomerase id=3362958 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Sulfolobus taxon_order=Sulfolobales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Enoyl-CoA hydratase/isomerase
13_1_40cm_scaffold_1895_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11818..12843
DNA (1026bp) protein (342aa)
Luciferase-like, subgroup id=2821331 bin=GWC2_Methylomirabilis_70_24 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
luciferase-like protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
luciferase-like protein
13_1_40cm_scaffold_1895_15
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12877..13557
DNA (681bp) protein (227aa)
MgtC family protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G5I4_SORC5
MgtC family protein
MgtC family protein {ECO:0000313|EMBL:CAN99033.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellul
13_1_40cm_scaffold_1895_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13554..14243
DNA (690bp) protein (230aa)
beta subunit of phenylphosphate carboxylase; K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Beta subunit of phenylphosphate carboxylase id=2117336 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
benzoate transporter
13_1_40cm_scaffold_1895_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14240..14974
DNA (735bp) protein (245aa)
beta subunit of phenylphosphate carboxylase Tax=GWA2_Rokubacteria_73_35_curated
Beta subunit of phenylphosphate carboxylase id=4947518 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
benzoate transporter
13_1_40cm_scaffold_1895_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

15397..15981
DNA (585bp) protein (195aa)
menC; L-alanine-DL-glutamate epimerase (EC:4.2.1.-) Tax=GWA2_Rokubacteria_70_23_curated
L-Alanine-DL-glutamate epimerase id=3983835 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
mandelate racemase/muconate lactonizing protein
13_1_40cm_scaffold_1895_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15978..16448
DNA (471bp) protein (157aa)
GCN5-related N-acetyltransferase id=4947517 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GCN5-ike N-acetyltransferase Tax=GWA2_Rokubacteria_73_35_curated
N-acetyltransferase GCN5
13_1_40cm_scaffold_1895_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16445..17557)
DNA (1113bp) protein (371aa)
major facilitator superfamily MFS 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fosmidomycin resistance protein id=4947488 bin=GWA2_Methylomirabilis_73_35 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major Facilitator Superfamily protein
13_1_40cm_scaffold_1895_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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17649..18269
DNA (621bp) protein (207aa)
cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
ATP:cob(I)alamin adenosyltransferase id=4947487 bin=GWA2_Methylomirabilis_73_35 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1895_22
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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18266..19351
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037A0A12
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
putative monooxygenase
Displaying 22 items

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