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13_1_40cm_scaffold_225

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_225_1
unknown

Not on your lists

comp(1..84)
DNA (84bp) protein (28aa)

This feature has no annotations

13_1_40cm_scaffold_225_2
unknown

Not on your lists

comp(351..959)
DNA (609bp) protein (203aa)

This feature has no annotations

13_1_40cm_scaffold_225_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

1747..2325
DNA (579bp) protein (193aa)
RNA-binding protein, containing S1 domain n=2 Tax=Methanosarcina mazei RepID=M1QJY3_METMZ
RNA binding protein; K07573 exosome complex component CSL4 Tax=RBG_16_Archaea_50_20_curated
RNA-binding protein
13_1_40cm_scaffold_225_4
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

2322..2615
DNA (294bp) protein (98aa)
DNA-directed RNA polymerase subunit L (EC:2.7.7.6)
DNA-directed RNA polymerase subunit L; K03056 DNA-directed RNA polymerase subunit L [EC:2.7.7.6] id=5241762 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
DNA-directed RNA polymerase subunit L Tax=RBG_13_Bathyarchaeota_46_16b_curated
13_1_40cm_scaffold_225_5
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2772..3308
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7AUS0_9FIRM
HAD hydrolase, family IA
Putative uncharacterized protein {ECO:0000313|EMBL:EEC55961.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
13_1_40cm_scaffold_225_6
Thermococcus nautili, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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3351..3713
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) RepID=C5A5J1_THEGJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHL21957.1}; TaxID=195522 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus nautili.;"
13_1_40cm_scaffold_225_7
unknown

Not on your lists

3716..4210
DNA (495bp) protein (165aa)

This feature has no annotations

13_1_40cm_scaffold_225_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

4247..4570
DNA (324bp) protein (108aa)
DNA-directed RNA polymerase subunit n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZPL5_THELI
DNA-directed RNA polymerase subunit M Tax=RBG_16_Archaea_50_20_curated
DNA-directed RNA polymerase subunit M
13_1_40cm_scaffold_225_9
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

4573..5337
DNA (765bp) protein (255aa)
DNA polymerase sliding clamp n=1 Tax=Pyrobaculum calidifontis (strain JCM 11548 / VA1) RepID=A3MUU8_PYRCJ
proliferating cell nuclear antigen PcnA; K04802 proliferating cell nuclear antigen Tax=RBG_16_Archaea_50_20_curated
monomeric archaeal DNA polymerase sliding clamp
13_1_40cm_scaffold_225_10
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(5458..5964)
DNA (507bp) protein (169aa)
Putative transposase, IS605 OrfB family n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFZ7_NITGG
transposase, IS605 OrfB family Tax=RBG_16_Thaumarchaeota_49_8_curated
putative transposase IS605 OrfB family
13_1_40cm_scaffold_225_11
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

6313..7365
DNA (1053bp) protein (351aa)
priB; DNA primase, large subunit; K02685 DNA primase large subunit [EC:2.7.7.-] Tax=RBG_16_Archaea_50_20_curated
DNA primase large subunit PriL n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I855_METCZ
priB; DNA primase, large subunit
13_1_40cm_scaffold_225_12
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

7352..8566
DNA (1215bp) protein (405aa)
putative DNA primase, small subunit; K02683 DNA primase [EC:2.7.7.-] Tax=RBG_16_Archaea_50_20_curated
DNA primase small subunit (EC:2.7.7.-)
DNA primase small subunit PriS n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N7C9_9ARCH
13_1_40cm_scaffold_225_13
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

9691..10482
DNA (792bp) protein (264aa)
Translation initiation factor 2 subunit alpha n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=IF2A_METKA
translation initiation factor 2, subunit alpha; K03237 translation initiation factor 2 subunit 1 Tax=RBG_16_Archaea_50_20_curated
SUI2; translation initiation factor IF-2 subunit alpha
13_1_40cm_scaffold_225_14
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(10656..12965)
DNA (2310bp) protein (770aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N5Y4_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_scaffold_225_15
unknown

Not on your lists

comp(13420..14094)
DNA (675bp) protein (225aa)

This feature has no annotations

13_1_40cm_scaffold_225_16
unknown

Not on your lists

14480..14923
DNA (444bp) protein (148aa)

This feature has no annotations

13_1_40cm_scaffold_225_17
unknown

Not on your lists

14980..15489
DNA (510bp) protein (170aa)

This feature has no annotations

13_1_40cm_scaffold_225_18
unknown

Not on your lists

comp(15667..16008)
DNA (342bp) protein (114aa)

This feature has no annotations

13_1_40cm_scaffold_225_19
unknown

Not on your lists

comp(16005..16385)
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_40cm_scaffold_225_20
unknown

Not on your lists

comp(16823..17119)
DNA (297bp) protein (99aa)

This feature has no annotations

13_1_40cm_scaffold_225_trna_1
unknown

Not on your lists

comp(17095..17202)
DNA (108bp)
transferRNA
13_1_40cm_scaffold_225_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(17269..18309)
DNA (1041bp) protein (347aa)
Phosphate uptake regulator n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJW8_NITGG
phoU1; phosphate uptake regulator
Phosphate uptake regulator {ECO:0000313|EMBL:AFU60405.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphae
13_1_40cm_scaffold_225_22
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

18816..19997
DNA (1182bp) protein (394aa)
Phosphate ABC transporter, periplasmic phosphate-binding protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILL2_NITGG
pstC; phosphate ABC transporter substrate-binding protein
Phosphate ABC transporter, periplasmic phosphate-binding protein {ECO:0000313|EMBL:AFU60488.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae;
13_1_40cm_scaffold_225_23
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

20052..21068
DNA (1017bp) protein (339aa)
ABC phosphate uptake transporter, substrate-binding protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIL0_NITGG
pstS1; ABC phosphate uptake transporter, substrate-binding protein
ABC phosphate uptake transporter, substrate-binding protein {ECO:0000313|EMBL:AFU57922.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitro
13_1_40cm_scaffold_225_24
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

21071..21928
DNA (858bp) protein (286aa)
Phosphate ABC transporter, inner membrane subunit PstA n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CV89_9ARCH
Phosphate ABC transporter, inner membrane subunit PstA {ECO:0000313|EMBL:EGP93204.1}; TaxID=1001994 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;"
pstA; Phosphate transport system permease protein PstA
13_1_40cm_scaffold_225_25
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

21925..22755
DNA (831bp) protein (277aa)
pstB; ABC phosphate uptake transporter, ATP-binding protein (EC:3.6.3.27) Tax=RBG_16_Thaumarchaeota_49_8_curated
pstB; ABC phosphate uptake transporter, ATP-binding protein (EC:3.6.3.27)
ABC phosphate uptake transporter, ATP-binding protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMI6_NITGG
13_1_40cm_scaffold_225_26
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

22778..23401
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Crenarchaeota archaeon SCGC AAA471-B05 RepID=UPI000380DBDC
phosphate uptake regulator, PhoU Tax=RBG_16_Thaumarchaeota_49_8_curated
phosphate uptake regulator
13_1_40cm_scaffold_225_27
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(24001..24837)
DNA (837bp) protein (279aa)
putative DNA methylase Tax=CG_Ignavi_01
Putative DNA methylase id=3905982 bin=GWF2_Melioribacter_38_21 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
hypothetical protein
13_1_40cm_scaffold_225_28
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

25256..28603
DNA (3348bp) protein (1116aa)
rpoB; DNA-directed RNA polymerase subunit B (EC:2.7.7.6) Tax=RBG_16_Archaea_50_20_curated
rpoB; DNA-directed RNA polymerase subunit B (EC:2.7.7.6)
DNA-directed RNA polymerase n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0ILI7_NITGG
13_1_40cm_scaffold_225_29
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

28606..32451
DNA (3846bp) protein (1282aa)
rpoA; DNA-directed RNA polymerase subunit A (EC:2.7.7.6) Tax=RBG_16_Archaea_50_20_curated
rpoA; DNA-directed RNA polymerase subunit A (EC:2.7.7.6)
DNA-directed RNA polymerase n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IC33_NITGG
Displaying items 1-30 of 50 in total

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