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13_1_40cm_scaffold_2283

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2283_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..377)
DNA (375bp) protein (125aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A498_GEMAT
redox-sensing transcriptional repressor Rex; K01926 redox-sensing transcriptional repressor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
redox-sensing transcriptional repressor Rex
13_1_40cm_scaffold_2283_2
Streptomyces leeuwenhoekii, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

542..1429
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Frankia sp. BCU110501 RepID=UPI0003711DE8
FkbM Family Methyltransferase {ECO:0000313|EMBL:CQR59644.1}; TaxID=1437453 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces leeuwenhoekii.;"
FkbM family methyltransferase
13_1_40cm_scaffold_2283_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(1439..1831)
DNA (393bp) protein (131aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A499_GEMAT
Ribosomal RNA small subunit methyltransferase A
13_1_40cm_scaffold_2283_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(2161..3741)
DNA (1581bp) protein (527aa)
Putative phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A0_GEMAT
putative phosphatase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
protein phosphatase 2C domain protein
13_1_40cm_scaffold_2283_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3756..4214)
DNA (459bp) protein (153aa)
Putative anti-sigma factor n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IEC1_PHYMF
response regulator receiver protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative anti-sigma factor
13_1_40cm_scaffold_2283_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4217..4552)
DNA (336bp) protein (112aa)
Anti-sigma factor antagonist n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A2_GEMAT
putative anti sigma factor antagonist Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
anti-anti-sigma factor
13_1_40cm_scaffold_2283_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4549..5466)
DNA (918bp) protein (306aa)
pta; phosphate acetyltransferase (EC:2.3.1.8); K00625 phosphate acetyltransferase [EC:2.3.1.8] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
pta; phosphate acetyltransferase (EC:2.3.1.8)
Phosphate acetyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A3_GEMAT
13_1_40cm_scaffold_2283_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5463..5948)
DNA (486bp) protein (162aa)
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A4_GEMAT
13_1_40cm_scaffold_2283_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5945..6565)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A5_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_scaffold_2283_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6562..8268)
DNA (1707bp) protein (569aa)
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A6_GEMAT
13_1_40cm_scaffold_2283_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8265..8969)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A7_GEMAT
hypothetical protein; K07164 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function DUF164
13_1_40cm_scaffold_2283_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8953..10725)
DNA (1773bp) protein (591aa)
dnaG; DNA primase (EC:2.7.7.-); K02316 DNA primase [EC:2.7.7.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
DNA primase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A8_GEMAT
DNA primase
13_1_40cm_scaffold_2283_13
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(10722..12488)
DNA (1767bp) protein (589aa)
Endonuclease MutS2 {ECO:0000255|HAMAP-Rule:MF_00092}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00092};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas
Endonuclease MutS2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=MUTS2_GEMAT
DNA mismatch repair protein
13_1_40cm_scaffold_2283_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12925..13368)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4B0_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91001.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2283_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13371..13565)
DNA (195bp) protein (65aa)
30S ribosomal protein S21 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RS21_GEMAT
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 Tax=GWC2_Gemmatimonadetes_71_10_curated
rpsU; 30S ribosomal protein S21
13_1_40cm_scaffold_2283_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13632..13970)
DNA (339bp) protein (113aa)
Histidine triad (HIT) protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1V6_SPHTD
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
histidine triad (HIT) protein
13_1_40cm_scaffold_2283_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13984..15156)
DNA (1173bp) protein (391aa)
Chaperone protein DnaJ n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4B5_GEMAT
dnaJ; chaperone protein DnaJ; K03686 molecular chaperone DnaJ Tax=GWC2_Gemmatimonadetes_71_10_curated
Chaperone protein dnaJ
13_1_40cm_scaffold_2283_18
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15153..16193)
DNA (1041bp) protein (347aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4B6_GEMAT
hrcA; heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gem
13_1_40cm_scaffold_2283_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16222..17376)
DNA (1155bp) protein (385aa)
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4B7_GEMAT
oxygen-independent coproporphyrinogen III oxidase
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:AHG91007.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2283_20
RLO_PLX_64_10, Bacteria

Not on your lists

comp(17986..19155)
DNA (1170bp) protein (390aa)
DNA processing protein DprA n=1 Tax=Ralstonia solanacearum RepID=UPI0001816C3B
DNA protecting protein DprA; K04096 DNA processing protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
DNA protecting protein DprA
13_1_40cm_scaffold_2283_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(19119..20111)
DNA (993bp) protein (331aa)
GTPase Obg n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4B9_GEMAT
GTPase obg
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;
13_1_40cm_scaffold_2283_22
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(20111..20548)
DNA (438bp) protein (146aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
Putative uncharacterized protein id=4262977 bin=GWC2_Nitrospirae_57_13 species=Oscillatoria nigro-viridis genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
13_1_40cm_scaffold_2283_23
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(20545..21264)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4C0_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Carboxymuconolactone decarboxylase
13_1_40cm_scaffold_2283_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(21245..22345)
DNA (1101bp) protein (367aa)
L-asparaginase II n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SM59_THEM7
L-asparaginase II
L-asparaginase II {ECO:0000313|EMBL:AHG91011.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2283_25
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(22387..23301)
DNA (915bp) protein (305aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4C2_GEMAT
hypothetical membrane protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAH38947.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (str
13_1_40cm_scaffold_2283_26
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

23430..24437
DNA (1008bp) protein (336aa)
Putative uncharacterized protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XRN8_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EHO40191.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
Displaying 26 items

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