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13_1_40cm_scaffold_2314

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2314_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(31..975)
DNA (945bp) protein (315aa)
ABC transporter permease id=3709817 bin=GWC2_Methylomirabilis_70_24 species=Cupriavidus basilensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
dppB3; PepT family ABC transporter permease Tax=GWA2_Rokubacteria_70_23_curated
dppB3; ABC transporter permease
13_1_40cm_scaffold_2314_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(994..2517)
DNA (1524bp) protein (508aa)
Hemin-binding lipoprotein id=3709818 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
dipeptide ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
dipeptide ABC transporter substrate-binding protein
13_1_40cm_scaffold_2314_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2532..3818)
DNA (1287bp) protein (429aa)
aminotransferase class-III; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamate-1-semialdehyde 2,1-aminomutase id=3772777 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aminotransferase class-III
13_1_40cm_scaffold_2314_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3849..4796)
DNA (948bp) protein (316aa)
zinc-binding alcohol dehydrogenase family protein (EC:1.1.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
alcohol dehydrogenase; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] id=14623416 bin=bin5_DeltaP species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
alcohol dehydrogenase
13_1_40cm_scaffold_2314_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5009..5893)
DNA (885bp) protein (295aa)
Citryl-CoA lyase (EC:4.1.3.34); K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Citryl-CoA lyase (EC:4.1.3.34)
Citryl-CoA lyase id=3209651 bin=GWC2_Methylomirabilis_70_24 species=Mesorhizobium opportunistum genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_2314_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5896..6348)
DNA (453bp) protein (151aa)
Acyl dehydratase id=1700405 bin=GWA2_Methylomirabilis_73_35 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative monoamine oxidase regulatory protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dehydratase
13_1_40cm_scaffold_2314_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6421..7629
DNA (1209bp) protein (403aa)
dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase id=3696600 bin=GWC2_Methylomirabilis_70_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dehydrogenase
13_1_40cm_scaffold_2314_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7727..8590)
DNA (864bp) protein (288aa)
DMT family permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DMT family permease id=14627694 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
DMT family permease
13_1_40cm_scaffold_2314_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8679..9809
DNA (1131bp) protein (377aa)
Putative uncharacterized protein id=1700397 bin=GWA2_Methylomirabilis_73_35 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_2314_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9831..11393)
DNA (1563bp) protein (521aa)
h16_A2949; ABC transporter periplasmic protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2949; ABC transporter periplasmic protein
13_1_40cm_scaffold_2314_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11427..12527)
DNA (1101bp) protein (367aa)
formyl-CoA transferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Acyl-CoA synthase id=4424332 bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formyl-CoA transferase
13_1_40cm_scaffold_2314_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12527..13414)
DNA (888bp) protein (296aa)
Putative uncharacterized protein id=4748154 bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
abhydrolase 1 Tax=GWA2_Rokubacteria_70_23_curated
abhydrolase 1
13_1_40cm_scaffold_2314_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13424..13885)
DNA (462bp) protein (154aa)
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcription elongation factor GreA; K03624 transcription elongation factor GreA id=14625338 bin=bin7_NC10_sister species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
greA; transcription elongation factor GreA
13_1_40cm_scaffold_2314_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14073..14294)
DNA (222bp) protein (74aa)
30S ribosomal protein S21 id=4327962 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 Tax=GWA2_Rokubacteria_73_35_curated
30S ribosomal protein S21
13_1_40cm_scaffold_2314_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14514..14849)
DNA (336bp) protein (112aa)
RNP-1 like RNA-binding protein id=4077037 bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNP-1 like RNA-binding protein Tax=GWC2_Rokubacteria_70_16_curated
RNA-binding proteins (RRM domain)
13_1_40cm_scaffold_2314_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15005..16900)
DNA (1896bp) protein (632aa)
peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidylprolyl cis-trans isomerase, putative id=4433399 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_2314_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(16907..17746)
DNA (840bp) protein (280aa)
tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36); K07442 tRNA (adenine57-N1/adenine58-N1)-methyltransferase [EC:2.1.1.219 2.1.1.220] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
tRNA (Adenine-N(1)-)-methyltransferase id=4549106 bin=GWA2_Methylomirabilis_73_35 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (adenine-N(1)-)-methyltransferase
13_1_40cm_scaffold_2314_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17743..18969)
DNA (1227bp) protein (409aa)
major facilitator transporter; K08223 MFS transporter, FSR family, fosmidomycin resistance protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fosmidomycin resistance protein; K08223 MFS transporter, FSR family, fosmidomycin resistance protein id=14625329 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator transporter
13_1_40cm_scaffold_2314_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

19558..19968
DNA (411bp) protein (137aa)
CMP/dCMP deaminase zinc-binding n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NMJ4_ROSCS
CMP/dCMP deaminase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
CMP/dCMP deaminase
13_1_40cm_scaffold_2314_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20005..20805)
DNA (801bp) protein (267aa)
putative CheY-like response regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Multi-sensor hybrid histidine kinase id=4549114 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver
13_1_40cm_scaffold_2314_21
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(20849..22021)
DNA (1173bp) protein (391aa)
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] id=14428654 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin3_NC10 organism_group=NC10
acyl-CoA dehydrogenase
13_1_40cm_scaffold_2314_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22025..22531)
DNA (507bp) protein (169aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_2314_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22533..23192)
DNA (660bp) protein (220aa)
hypothetical protein; K09125 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Hypothetical conserved protein id=4453409 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2314_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23358..24668)
DNA (1311bp) protein (437aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625321 bin=bin7_NC10_sister species=Smithella sp. ME-1 genus=Smithella taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_2314_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(24681..25694)
DNA (1014bp) protein (338aa)
PDZ/DHR/GLGF domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PDZ/DHR/GLGF domain protein id=3234512 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative serine protease
13_1_40cm_scaffold_2314_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25711..26709)
DNA (999bp) protein (333aa)
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
dTDP-glucose 4,6-dehydratase id=3234516 bin=GWA2_Methylomirabilis_73_35 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dTDP-glucose 4,6-dehydratase
13_1_40cm_scaffold_2314_27
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(26714..27250)
DNA (537bp) protein (179aa)
putative dTDP-4-dehydrorhamnose 3,5-epimerase; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative dTDP-4-dehydrorhamnose 3,5-epimerase id=3234518 bin=GWA2_Methylomirabilis_73_35 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative dTDP-4-dehydrorhamnose 3,5-epimerase
13_1_40cm_scaffold_2314_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(27265..28149)
DNA (885bp) protein (295aa)
glucose-1-phosphate thymidylyltransferase; K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] Tax=GWA2_Rokubacteria_73_35_curated
Glucose-1-phosphate thymidylyltransferase id=3234520 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glucose-1-phosphate thymidylyltransferase
13_1_40cm_scaffold_2314_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

28246..29166
DNA (921bp) protein (307aa)
moeB1; molybdopterin biosynthesis protein MoeB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Molybdopterin biosynthesis protein MoeB id=3234522 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
moeB1; molybdopterin biosynthesis protein MoeB
13_1_40cm_scaffold_2314_30
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

29188..29472
DNA (285bp) protein (95aa)
UBA/THIF-type NAD/FAD binding domain-containing protein; K11996 adenylyltransferase and sulfurtransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UBA/THIF-type NAD/FAD binding protein id=4341246 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UBA/THIF-type NAD/FAD binding protein
Displaying items 1-30 of 34 in total

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