ggKbase home page

13_1_40cm_scaffold_2370

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2370_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1..891)
DNA (891bp) protein (297aa)
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] id=14626083 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] Tax=CSP1_6_Rokubacteria
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
13_1_40cm_scaffold_2370_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1069..1884)
DNA (816bp) protein (272aa)
electron transfer flavoprotein subunit alpha Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Electron transfer flavoprotein alpha/beta-subunit id=2475790 bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
electron transfer flavoprotein subunit alpha/beta
13_1_40cm_scaffold_2370_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2001..2780)
DNA (780bp) protein (260aa)
fixA; electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Electron transfer flavoprotein, beta subunit id=2475787 bin=GWC2_Methylomirabilis_70_16 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
electron transfer flavoprotein beta-subunit
13_1_40cm_scaffold_2370_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2777..3532)
DNA (756bp) protein (252aa)
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator id=14626080 bin=bin7_NC10_sister species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
GntR family transcriptional regulator
13_1_40cm_scaffold_2370_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3731..4801)
DNA (1071bp) protein (357aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) id=14626074 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
13_1_40cm_scaffold_2370_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4974..5603)
DNA (630bp) protein (210aa)
ABC transporter ATP-binding protein id=1703882 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter ATP-binding protein
13_1_40cm_scaffold_2370_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5581..7401)
DNA (1821bp) protein (607aa)
Branched-chain amino acid transport system permease protein LivM id=1703884 bin=GWA2_Methylomirabilis_73_35 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
branched-chain amino acid ABC transporter permease
13_1_40cm_scaffold_2370_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7398..8327)
DNA (930bp) protein (310aa)
Branched-chain amino acid ABC-type transport system, permease components id=2644245 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched chain amino acid ABC transporter; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
High-affinity branched-chain amino acid transport system permease protein LivH
13_1_40cm_scaffold_2370_9
unknown

Not on your lists

comp(8273..8380)
DNA (108bp) protein (36aa)

This feature has no annotations

13_1_40cm_scaffold_2370_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8403..9671)
DNA (1269bp) protein (423aa)
ABC-type branched-chain amino acid transport systems id=1703886 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type branched-chain amino acid transport systems; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC-type branched-chain amino acid transport systems
13_1_40cm_scaffold_2370_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9671..10726)
DNA (1056bp) protein (352aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Butyryl-CoA dehydrogenase id=1703889 bin=GWA2_Methylomirabilis_73_35 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase
13_1_40cm_scaffold_2370_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10738..11916)
DNA (1179bp) protein (393aa)
CoA-transferase family III protein id=1703890 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative acyl-CoA transferase/carnitine dehydratase Tax=GWA2_Rokubacteria_73_35_curated
putative acyl-CoA transferase/carnitine dehydratase
13_1_40cm_scaffold_2370_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11939..13210)
DNA (1272bp) protein (424aa)
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phenylacetate--CoA ligase (EC:6.2.1.30)
Phenylacetate--CoA ligase id=1703891 bin=GWA2_Methylomirabilis_73_35 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2370_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13213..13881)
DNA (669bp) protein (223aa)
High-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F) id=1703893 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
high-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F); K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
amino acid ABC transporter ATP-binding protein
13_1_40cm_scaffold_2370_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13887..14966)
DNA (1080bp) protein (360aa)
putative branched chain amino acid ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative branched chain amino acid ABC transporter substrate-binding protein id=4849842 bin=GWC2_Methylomirabilis_70_16 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative branched chain amino acid ABC transporter substrate-binding protein
13_1_40cm_scaffold_2370_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14963..15283)
DNA (321bp) protein (107aa)
livM; branched-chain amino acid ABC transporter system, permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Branched-chain amino acid ABC transporter permease protein id=1703897 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
13_1_40cm_scaffold_2370_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15262..16371)
DNA (1110bp) protein (370aa)
Opine dehydrogenase (EC:1.5.1.28) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Opine dehydrogenase (EC:1.5.1.28)
NAD-dependent glycerol-3-phosphate dehydrogenase-like protein id=1703904 bin=GWA2_Methylomirabilis_73_35 species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2370_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(16415..17608)
DNA (1194bp) protein (398aa)
Formyl-CoA transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Formyl-CoA transferase id=1703945 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
L-carnitine dehydratase/bile acid-inducible protein F
13_1_40cm_scaffold_2370_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(17786..20065)
DNA (2280bp) protein (760aa)
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein (EC:1.17.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
xanthine dehydrogenase (EC:1.17.1.4)
Xanthine dehydrogenase id=4849835 bin=GWC2_Methylomirabilis_70_16 species=Magnetospirillum sp. SO-1 genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_2370_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20068..21663)
DNA (1596bp) protein (532aa)
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] id=14628013 bin=bin7_NC10_sister species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2)
13_1_40cm_scaffold_2370_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(21749..22144)
DNA (396bp) protein (132aa)
cobalamin B12-binding domain-containing protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cobalamin B12-binding domain protein id=1703951 bin=GWA2_Methylomirabilis_73_35 species=Thermotoga lettingae genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin B12-binding domain-containing protein
13_1_40cm_scaffold_2370_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(22510..23466)
DNA (957bp) protein (319aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=GWA2_Rokubacteria_70_23_curated
3-hydroxyacyl-CoA dehydrogenase family protein id=4384724 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxybutyryl-CoA dehydrogenase
13_1_40cm_scaffold_2370_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23525..24691)
DNA (1167bp) protein (389aa)
acetyl-CoA acetyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Propanoyl-CoA C-acyltransferase id=4254074 bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
acetyl-CoA acetyltransferase
13_1_40cm_scaffold_2370_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(24688..25140)
DNA (453bp) protein (151aa)
acyl dehydratase Tax=GWA2_Rokubacteria_70_23_curated
MaoC domain protein dehydratase id=4384721 bin=GWF2_Methylomirabilis_70_14 species=Thermoplasmatales archaeon SCGC AB-540-F20 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl dehydratase
13_1_40cm_scaffold_2370_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25172..26332)
DNA (1161bp) protein (387aa)
acyl-CoA dehydrogenase domain protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl-CoA dehydrogenase domain protein id=4254262 bin=GWC2_Methylomirabilis_70_24 species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
acyl-CoA dehydrogenase domain protein
13_1_40cm_scaffold_2370_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26329..27987)
DNA (1659bp) protein (553aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] id=14627495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
5-oxoprolinase (EC:3.5.2.9)
13_1_40cm_scaffold_2370_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(28013..30082)
DNA (2070bp) protein (690aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
hyuA; N-methylhydantoinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (ATP-hydrolyzing) id=4849827 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 27 items

View Taxonomy