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13_1_40cm_scaffold_2376

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2376_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3..359)
DNA (357bp) protein (119aa)
NusA antitermination factor; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NusA antitermination factor id=1723421 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusA antitermination factor
13_1_40cm_scaffold_2376_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(372..839)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP id=1723420 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_2376_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(919..2604)
DNA (1686bp) protein (562aa)
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) id=14625411 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15)
13_1_40cm_scaffold_2376_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2611..2943)
DNA (333bp) protein (111aa)
ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ferredoxin id=3388822 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ferredoxin
13_1_40cm_scaffold_2376_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2947..4038)
DNA (1092bp) protein (364aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase id=4153759 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_2376_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4058..5425)
DNA (1368bp) protein (456aa)
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] id=14625408 bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALJ24 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rseP; regulator of sigma E protease (EC:3.4.24.-)
13_1_40cm_scaffold_2376_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5422..6597)
DNA (1176bp) protein (392aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase id=4153757 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_2376_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6594..7445)
DNA (852bp) protein (284aa)
cdsA; phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase id=2265690 bin=GWA2_Methylomirabilis_73_35 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2376_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7471..8253)
DNA (783bp) protein (261aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=GWA2_Rokubacteria_73_35_curated
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase id=2265665 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2376_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8268..8831)
DNA (564bp) protein (188aa)
ribosome recycling factor; K02838 ribosome recycling factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Ribosome-recycling factor id=2265664 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosome recycling factor
13_1_40cm_scaffold_2376_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8856..9254)
DNA (399bp) protein (133aa)
pyrH; uridylate kinase (EC:2.7.4.-); K09903 uridylate kinase [EC:2.7.4.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uridylate kinase id=2265663 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyrH; uridylate kinase
13_1_40cm_scaffold_2376_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9525..10127)
DNA (603bp) protein (201aa)
elongation factor Ts Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Elongation factor Ts id=2265662 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tsf; elongation factor Ts
13_1_40cm_scaffold_2376_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(10132..10893)
DNA (762bp) protein (254aa)
30S ribosomal protein S2 id=2265661 bin=GWA2_Methylomirabilis_73_35 species=Salimicrobium sp. MJ3 genus=Salimicrobium taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=GWA2_Rokubacteria_73_35_curated
rpsB; 30S ribosomal protein S2
13_1_40cm_scaffold_2376_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10976..12220)
DNA (1245bp) protein (415aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_cur
Arginine biosynthesis bifunctional protein ArgJ id=2265660 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ArgJ; N-acetylglutamate synthase
13_1_40cm_scaffold_2376_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12220..13269)
DNA (1050bp) protein (350aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] Tax=GWA2_Rokubacteria_73_35_curated
argC; n-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase id=2265658 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2376_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(13286..13681)
DNA (396bp) protein (132aa)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S9 id=2265656 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S9
13_1_40cm_scaffold_2376_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(13681..14136)
DNA (456bp) protein (152aa)
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L13 id=2265654 bin=GWA2_Methylomirabilis_73_35 species=Bacillus azotoformans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L13
13_1_40cm_scaffold_2376_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14219..14560)
DNA (342bp) protein (114aa)
Putative uncharacterized protein id=4761815 bin=GWA2_Elusimicrobia_69_24 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
G-D-S-L family lipolytic protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_2376_19
unknown

Not on your lists

14679..15443
DNA (765bp) protein (255aa)

This feature has no annotations

13_1_40cm_scaffold_2376_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(15350..16006)
DNA (657bp) protein (219aa)
nth; endonuclease III (EC:4.2.99.18) id=14625396 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
nth; endonuclease III (EC:4.2.99.18) Tax=CSP1_6_Rokubacteria
nth; endonuclease III (EC:4.2.99.18)
13_1_40cm_scaffold_2376_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16003..18114)
DNA (2112bp) protein (704aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2265650 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2376_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18147..18866)
DNA (720bp) protein (240aa)
methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase id=2265648 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2376_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18872..19297)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBV3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_2376_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19294..20295)
DNA (1002bp) protein (334aa)
Aminotransferase class I and II id=2265644 bin=GWA2_Methylomirabilis_73_35 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aspartate aminotransferase Tax=GWA2_Rokubacteria_73_35_curated
aspartate aminotransferase
Displaying 24 items

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