ggKbase home page

13_1_40cm_scaffold_239

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_239_1

Not on your lists

comp(2..169)
DNA (168bp) protein (56aa)
Maleate cis-trans isomerase n=1 Tax=uncultured Chloroflexi bacterium HF0500_03M05 RepID=E0XY61_9CHLR
Maleate cis-trans isomerase {ECO:0000313|EMBL:ADI19352.1}; TaxID=710737 species="Bacteria; Chloroflexi; environmental samples.;" source="uncultured Chloroflexi bacterium HF0500_03M05.;"
13_1_40cm_scaffold_239_2
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(202..723)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037252B4
DsrE/DsrF-like family protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
hypothetical protein
13_1_40cm_scaffold_239_3
unknown

Not on your lists

comp(788..1291)
DNA (504bp) protein (168aa)

This feature has no annotations

13_1_40cm_scaffold_239_4
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1426..2490)
DNA (1065bp) protein (355aa)
N5,N10-methylenetetrahydromethanopterin reductase protein n=1 Tax=uncultured bacterium CSL144 RepID=G4WVR2_9BACT
coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein
13_1_40cm_scaffold_239_5
unknown

Not on your lists

comp(2553..3515)
DNA (963bp) protein (321aa)

This feature has no annotations

13_1_40cm_scaffold_239_6
unknown

Not on your lists

comp(3991..4410)
DNA (420bp) protein (140aa)

This feature has no annotations

13_1_40cm_scaffold_239_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(4742..4915)
DNA (174bp) protein (58aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein id=14628122 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_scaffold_239_8
unknown

Not on your lists

comp(4912..5454)
DNA (543bp) protein (181aa)

This feature has no annotations

13_1_40cm_scaffold_239_9
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6134..7666
DNA (1533bp) protein (511aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003645E9E
FAD-dependent oxidoreductase {ECO:0000313|EMBL:ERP42296.1}; TaxID=1221522 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
monooxygenase, FAD-binding
13_1_40cm_scaffold_239_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7864..8673
DNA (810bp) protein (270aa)
OmpA/MotB domain protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8C8_GEOUR
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:ABQ28046.1}; Flags: Precursor;; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source=
13_1_40cm_scaffold_239_11
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8811..9509)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0PXQ4_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL23246.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
13_1_40cm_scaffold_239_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10270..10803
DNA (534bp) protein (178aa)
id=14626280 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_239_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11185..11601)
DNA (417bp) protein (139aa)
dehydratase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEFAF
acyl dehydratase MaoC Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Putative dehydratase
13_1_40cm_scaffold_239_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11585..12034)
DNA (450bp) protein (150aa)
acyl dehydratase MaoC Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
acyl dehydratase MaoC
13_1_40cm_scaffold_239_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12314..12691
DNA (378bp) protein (126aa)
UspA domain-containing protein id=3995090 bin=GWA2_Methylomirabilis_73_35 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UspA domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_239_16
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13259..13651
DNA (393bp) protein (131aa)
Integral membrane sensor hybrid histidine kinase n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UQ48_9CYAN
Histidine kinase {ECO:0000313|EMBL:EYF01271.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces ap
PAS domain S-box
13_1_40cm_scaffold_239_17
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

13942..14343
DNA (402bp) protein (134aa)
Response regulator n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PFB4_9DELT
response regulator Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
response regulator
13_1_40cm_scaffold_239_18
unknown

Not on your lists

15046..16248
DNA (1203bp) protein (401aa)

This feature has no annotations

13_1_40cm_scaffold_239_19
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16389..17132
DNA (744bp) protein (248aa)
Putative Asp/Glu/Hydantoin racemase n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HD65_ACTM4
putative Asp/Glu/Hydantoin racemase
Putative Asp/Glu/Hydantoin racemase {ECO:0000313|EMBL:BAL90952.1}; TaxID=512565 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missourie
13_1_40cm_scaffold_239_20
R_NC10_66_22, NC10, Bacteria

Not on your lists

17252..18229
DNA (978bp) protein (326aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein; K01989 putative ABC transport system substrate-binding protein id=14627342 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter substrate-binding protein
13_1_40cm_scaffold_239_21
unknown

Not on your lists

18241..18339
DNA (99bp) protein (33aa)

This feature has no annotations

13_1_40cm_scaffold_239_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

18353..20014
DNA (1662bp) protein (554aa)
Cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQV1_KORVE
Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding domain protein
Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:AHG92267.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KB
13_1_40cm_scaffold_239_23
unknown

Not on your lists

comp(20075..20194)
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_scaffold_239_24
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20323..21519
DNA (1197bp) protein (399aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F9E5_DESDL
Uncharacterized protein {ECO:0000313|EMBL:KJS22135.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
amino acid ABC transporter substrate-binding protein
13_1_40cm_scaffold_239_25
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21565..22674
DNA (1110bp) protein (370aa)
Luciferase-like monooxygenase n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0L3I1_HALJP
Luciferase-like monooxygenase {ECO:0000313|EMBL:EMA26989.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica D
Luciferase-like, subgroup
13_1_40cm_scaffold_239_26
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22698..24233)
DNA (1536bp) protein (512aa)
Transcriptional regulator, GntR family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCD8_PHEZH
Bradyrhizobium elkanii strain UASWS1015 Contig183, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45879.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
GntR family transcriptional regulator
13_1_40cm_scaffold_239_27
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24234..25466
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQM0_PUSST
Uncharacterized protein {ECO:0000313|EMBL:KIF83807.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum s
hypothetical protein
13_1_40cm_scaffold_239_28
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

25463..26659
DNA (1197bp) protein (399aa)
hypothetical protein id=14425627 bin=bin1_lowGC species=Amycolicicoccus subflavus genus=Amycolicicoccus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein Tax=CSP1_2_Dadabacteria
hypothetical protein
13_1_40cm_scaffold_239_29
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

27259..27633
DNA (375bp) protein (125aa)
Response regulator n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MWY3_CORCM
response regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
divK; response regulator
13_1_40cm_scaffold_239_30
unknown

Not on your lists

comp(27670..27918)
DNA (249bp) protein (83aa)

This feature has no annotations

Displaying items 1-30 of 33 in total

View Taxonomy