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13_1_40cm_scaffold_2408

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2408_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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53..1111
DNA (1059bp) protein (353aa)
Peptide chain release factor 1 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7L6_GEMAT
Peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium
13_1_40cm_scaffold_2408_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1104..2012
DNA (909bp) protein (303aa)
putative methyltransferase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7L7_GEMAT
protein-(glutamine-N5) methyltransferase, release factor-specific
13_1_40cm_scaffold_2408_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2009..2362
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7L8_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
protein of unknown function DUF964
13_1_40cm_scaffold_2408_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2362..2991
DNA (630bp) protein (210aa)
tmk; dTMP kinase; K00943 dTMP kinase [EC:2.7.4.9] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5STM7_9BACT
13_1_40cm_scaffold_2408_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2988..4607
DNA (1620bp) protein (540aa)
ctpA; carboxyl-terminal processing protease precursor (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Carboxyl-terminal processing protease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M0_GEMAT
carboxyl-terminal protease
13_1_40cm_scaffold_2408_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

4609..5487
DNA (879bp) protein (293aa)
NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NQA9_ROSCS
NADP oxidoreductase coenzyme F420-dependent Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
NADP oxidoreductase coenzyme F420-dependent
13_1_40cm_scaffold_2408_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5569..6381
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PDV0_9CYAN id=5225296 bin=16ft_combo_ws3_JS1 species=Calothrix sp. PCC 7507 genus=Calothrix taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_1_40cm_scaffold_2408_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

6378..6596
DNA (219bp) protein (73aa)
ptsN; PTS family fructose/mannitol (fru) porter component IIA; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] id=24490873 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Flexithrix dorotheae genus=Flexithrix taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ptsN; PTS family fructose/mannitol (fru) porter component IIA; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] Tax=RBG_16_RIF_WS3X_71_46_curated
DNA-binding protein/PTS system, IIA component
13_1_40cm_scaffold_2408_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6634..7269)
DNA (636bp) protein (212aa)
Outer-membrane lipoprotein carrier protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M2_GEMAT
lolA; outer-membrane lipoprotein carrier protein precursor; K03634 outer membrane lipoprotein carrier protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
lolA; outer-membrane lipoprotein carrier protein precursor
13_1_40cm_scaffold_2408_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7394..8434)
DNA (1041bp) protein (347aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M3_GEMAT
phospho-2-dehydro-3-deoxyheptonate aldolase
13_1_40cm_scaffold_2408_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(8531..9127)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M4_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_scaffold_2408_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9234..12479)
DNA (3246bp) protein (1082aa)
Chromosome partition protein Smc n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M6_GEMAT
chromosome segregation protein; K03529 chromosome segregation protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
chromosome segregation protein
13_1_40cm_scaffold_2408_13
unknown

Not on your lists

comp(12476..12985)
DNA (510bp) protein (170aa)

This feature has no annotations

13_1_40cm_scaffold_2408_14
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13694..14965)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7M8_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH38238.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_1_40cm_scaffold_2408_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15230..18427)
DNA (3198bp) protein (1066aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7N3_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
surface antigen (D15)
13_1_40cm_scaffold_2408_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(18433..18840)
DNA (408bp) protein (136aa)
Ribosomal silencing factor RsfS n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7N4_GEMAT
hypothetical protein; K09710 ribosome-associated protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
iojap-like protein
13_1_40cm_scaffold_2408_17
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


comp(18880..19323)
DNA (444bp) protein (148aa)
50S ribosomal protein L9 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL9_GEMAT
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
50S ribosomal protein L9
13_1_40cm_scaffold_2408_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(19340..20431)
DNA (1092bp) protein (364aa)
30S ribosomal protein S6 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7N8_GEMAT
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=GWC2_Gemmatimonadetes_71_10_curated
rpsF; 30S ribosomal protein S6
13_1_40cm_scaffold_2408_19
unknown

Not on your lists

20754..21380
DNA (627bp) protein (209aa)

This feature has no annotations

13_1_40cm_scaffold_2408_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21425..21694
DNA (270bp) protein (90aa)
ThiamineS n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LNQ2_HALO1
sulfur transfer protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
sulfur transfer protein
13_1_40cm_scaffold_2408_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21691..22812
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LNQ3_HALO1
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_scaffold_2408_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(22828..23931)
DNA (1104bp) protein (368aa)
Ribosome-binding ATPase YchF n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7P0_GEMAT
GTP-binding protein; K06942 Tax=RBG_16_Gemmatimonadetes_66_8_curated
GTP-binding protein
13_1_40cm_scaffold_2408_23
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23936..24469)
DNA (534bp) protein (178aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=GWC2_Gemmatimonadetes_71_10_curated
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=PTH_GEMAT
13_1_40cm_scaffold_2408_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists


comp(24473..25240)
DNA (768bp) protein (256aa)
50S ribosomal protein L25 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7Q0_GEMAT
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
rplY; 50S ribosomal protein L25
Displaying 24 items

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