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13_1_40cm_scaffold_243

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_243_1
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..763)
DNA (762bp) protein (254aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI000364EA90
Thioredoxin reductase
13_1_40cm_scaffold_243_2
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

842..1195
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Mycobacterium xenopi RIVM700367 RepID=I0RFG8_MYCXE
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_scaffold_243_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

1195..1659
DNA (465bp) protein (155aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_scaffold_243_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1624..3558)
DNA (1935bp) protein (645aa)
PKD domain containing protein
DNA polymerase III subunit alpha Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_scaffold_243_5
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

3571..4860
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R8A2_PIRSD
hypothetical protein Tax=RBG_16_Actinobacteria_67_10_curated
hypothetical protein
13_1_40cm_scaffold_243_6
unknown

Not on your lists

4927..5235
DNA (309bp) protein (103aa)

This feature has no annotations

13_1_40cm_scaffold_243_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

5636..8485
DNA (2850bp) protein (950aa)
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.1.-); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=GWC2_Gemmatimonadetes_71_10_curated
ATP-dependent DNA helicase PcrA (EC:3.6.4.12)
DNA polymerase III, epsilon subunit n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUL9_9BACT
13_1_40cm_scaffold_243_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8299..8889)
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_APKG10H12 RepID=B3TC68_9ZZZZ
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Protein of unknown function DUF2911
13_1_40cm_scaffold_243_9
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(8886..10346)
DNA (1461bp) protein (487aa)
ligB; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003640147
ligB; ATP-dependent DNA ligase
13_1_40cm_scaffold_243_10
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(10361..11086)
DNA (726bp) protein (242aa)
XRE family transcriptional regulator Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
XRE family transcriptional regulator id=14627828 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
XRE family transcriptional regulator
13_1_40cm_scaffold_243_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

11220..11561
DNA (342bp) protein (114aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein id=14628081 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_243_12
unknown

Not on your lists

11581..11790
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_40cm_scaffold_243_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

11986..12204
DNA (219bp) protein (73aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Translation initiation factor IF-1
translation initiation factor IF-1 id=4225919 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
13_1_40cm_scaffold_243_14
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

12209..12649
DNA (441bp) protein (147aa)
NUDIX hydrolase n=3 Tax=Mycobacterium RepID=A1UH09_MYCSK
putative NTP pyrophosphohydrolase Tax=RBG_13_Caldithrix_44_9_curated
NUDIX hydrolase
13_1_40cm_scaffold_243_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12638..13150)
DNA (513bp) protein (171aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Nevskia ramosa RepID=UPI0003B76409
Methylated-DNA--protein-cysteine methyltransferase
13_1_40cm_scaffold_243_16
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13182..13814
DNA (633bp) protein (211aa)
PREDICTED: copper homeostasis protein cutC homolog n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0002652761
cytoplasmic copper homeostasis protein
Copper homeostasis protein CutC {ECO:0000256|HAMAP-Rule:MF_00795}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensi
13_1_40cm_scaffold_243_17
unknown

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comp(13811..14128)
DNA (318bp) protein (106aa)

This feature has no annotations

13_1_40cm_scaffold_243_18
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14184..14981
DNA (798bp) protein (266aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AWW2_HERA2
short-chain dehydrogenase/reductase SDR Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
short-chain dehydrogenase/reductase SDR
13_1_40cm_scaffold_243_19
unknown

Not on your lists

15243..16280
DNA (1038bp) protein (346aa)

This feature has no annotations

13_1_40cm_scaffold_243_20
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16296..17036
DNA (741bp) protein (247aa)
TIR protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BYT2_NITHN
TIR protein
TIR protein {ECO:0000313|EMBL:ADE16070.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain N
13_1_40cm_scaffold_243_21
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17005..18690)
DNA (1686bp) protein (562aa)
Glycosyl transferase n=1 Tax=Polaromonas sp. CF318 RepID=J3D2B0_9BURK
Glycosyl transferase {ECO:0000313|EMBL:EJL83269.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Pola
wcaA1; glycosyltransferase
13_1_40cm_scaffold_243_22
unknown

Not on your lists

comp(18690..19544)
DNA (855bp) protein (285aa)

This feature has no annotations

13_1_40cm_scaffold_243_23

Not on your lists

comp(19583..21319)
DNA (1737bp) protein (579aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00035F828A
Marine sediment metagenome DNA, contig: S12H4_C03603 {ECO:0000313|EMBL:GAI69031.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein
Displaying 23 items

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