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13_1_40cm_scaffold_2506

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2506_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..708)
DNA (708bp) protein (236aa)
carbon-monoxide dehydrogenase (acceptor) (EC:1.2.99.2) Tax=GWC2_Rokubacteria_70_16_curated
coxL; carbon monoxide dehydrogenase (EC:1.2.99.2)
Carbon-monoxide dehydrogenase (Acceptor) id=4489779 bin=GWC2_Methylomirabilis_70_16 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_2506_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(718..1194)
DNA (477bp) protein (159aa)
(2Fe-2S)-binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
[2Fe-2S] binding domain protein id=5010006 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
[2Fe-2S] binding domain-containing protein
13_1_40cm_scaffold_2506_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1298..2482)
DNA (1185bp) protein (395aa)
TIGR00299 family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TIGR00299 family protein id=14625901 bin=bin7_NC10_sister species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
TIGR00299 family protein
13_1_40cm_scaffold_2506_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2727..3485)
DNA (759bp) protein (253aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase id=4947257 bin=GWA2_Methylomirabilis_73_35 species=Desulfitobacterium metallireducens genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NCAIR mutase-like protein; K06898 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NCAIR mutase-like protein
13_1_40cm_scaffold_2506_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3478..4302)
DNA (825bp) protein (275aa)
hypothetical protein; K06864 uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
PP-loop domain-containing protein; K06864 uncharacterized protein id=14625899 bin=bin7_NC10_sister species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
ExsB family protein
13_1_40cm_scaffold_2506_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4314..5027)
DNA (714bp) protein (238aa)
carbohydrate kinase Tax=GWA2_Rokubacteria_73_35_curated
PfkB id=4947255 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar kinase
13_1_40cm_scaffold_2506_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4979..5968)
DNA (990bp) protein (330aa)
putative s-methyl-5'-thioadenosine phosphorylase (EC:2.4.2.28); K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative s-methyl-5'-thioadenosine phosphorylase (EC:2.4.2.28); K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] id=14625897 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
5'-methylthioadenosine phosphorylase (EC:2.4.2.28)
13_1_40cm_scaffold_2506_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5975..7291)
DNA (1317bp) protein (439aa)
tRNA 2-methylthioadenosine synthase -like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase id=4947253 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mtaB; tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase
13_1_40cm_scaffold_2506_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7288..8328)
DNA (1041bp) protein (347aa)
radical SAM enzyme, Cfr family; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] Tax=GWA2_Rokubacteria_73_35_curated
Probable dual-specificity RNA methyltransferase RlmN id=3130417 bin=GWC2_Methylomirabilis_70_24 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
radical SAM enzyme, Cfr family
13_1_40cm_scaffold_2506_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8351..9769)
DNA (1419bp) protein (473aa)
Uncharacterised monovalent cation:proton antiporter, CPA2 family n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBM9_9BACT
ybaL; monovalent cation:proton antiporter; K03455 monovalent cation:H+ antiporter-2, CPA2 family Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ybaL; monovalent cation:proton antiporter
13_1_40cm_scaffold_2506_11
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

9970..10155
DNA (186bp) protein (62aa)
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_2506_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10260..11456)
DNA (1197bp) protein (399aa)
glycerate 2-kinase (EC:2.7.1.-); K00050 hydroxypyruvate reductase [EC:1.1.1.81] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
glycerate 2-kinase (EC:2.7.1.-)
Glycerate 2-kinase id=4947252 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2506_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11453..12619)
DNA (1167bp) protein (389aa)
class I and II aminotransferase; K10907 aminotransferase [EC:2.6.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aminotransferase id=3824549 bin=GWC2_Methylomirabilis_70_24 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
class I and II aminotransferase
13_1_40cm_scaffold_2506_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12619..12861)
DNA (243bp) protein (81aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ferredoxin id=3824550 bin=GWC2_Methylomirabilis_70_24 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_2506_15
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(12880..13155)
DNA (276bp) protein (92aa)
molybdopterin synthase subunit MoaD Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=14625887 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
putative molybdopterin converting factor small subunit MoaD
13_1_40cm_scaffold_2506_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13170..14417)
DNA (1248bp) protein (416aa)
thrC; threonine synthase (TS) (EC:4.2.3.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
thrC; threonine synthase (TS) (EC:4.2.3.1) id=14625886 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
thrC; threonine synthase (TS) (EC:4.2.3.1)
13_1_40cm_scaffold_2506_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14536..16449
DNA (1914bp) protein (638aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4344626 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2506_18
bacterium YEK0313, Bacteria

Not on your lists

16454..17230
DNA (777bp) protein (259aa)
Permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HCT6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEJ11947.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative transmembrane protein
13_1_40cm_scaffold_2506_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17467..18378)
DNA (912bp) protein (304aa)
dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Dehydrogenase with different specificities id=3584037 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
dehydrogenase
13_1_40cm_scaffold_2506_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18479..19279)
DNA (801bp) protein (267aa)
hypothetical protein; K07058 membrane protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative membrane protein id=4969016 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2506_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19276..20181)
DNA (906bp) protein (302aa)
serine protease Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PDZ/DHR/GLGF domain-containing protein id=14625870 bin=bin7_NC10_sister species=Methylobacterium populi genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
serine protease
13_1_40cm_scaffold_2506_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20191..21036)
DNA (846bp) protein (282aa)
dienelactone hydrolase (EC:3.1.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Dienelactone hydrolase id=4969018 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2506_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21187..22689
DNA (1503bp) protein (501aa)
DNA polymerase II Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA polymerase id=4969020 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA polymerase II
Displaying 23 items

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