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13_1_40cm_scaffold_2539

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2539_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2..856
DNA (855bp) protein (285aa)
cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] id=14627498 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
cytochrome c oxidase subunit I (EC:1.9.3.1)
13_1_40cm_scaffold_2539_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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874..1863
DNA (990bp) protein (330aa)
Cytochrome oxidase assembly Tax=GWA2_Rokubacteria_73_35_curated
Putative Cytochrome oxidase assembly id=4083676 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Cytochrome oxidase assembly
13_1_40cm_scaffold_2539_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1860..2786
DNA (927bp) protein (309aa)
ctaB; protoheme IX farnesyltransferase (Heme O synthase) (Heme B farnesyltransferase) (EC:2.5.1.-) Tax=GWA2_Rokubacteria_73_35_curated
ctaB; protoheme IX farnesyltransferase (Heme O synthase) (Heme B farnesyltransferase) (EC:2.5.1.-)
Protoheme IX farnesyltransferase id=4083674 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2539_4
unknown

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2783..2881
DNA (99bp) protein (33aa)

This feature has no annotations

13_1_40cm_scaffold_2539_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2881..3549
DNA (669bp) protein (223aa)
Cytochrome c oxidase subunit III subfamily id=4083670 bin=GWA2_Methylomirabilis_73_35 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heme/copper-type cytochrome/quinol oxidase, subunit 3 Tax=GWA2_Rokubacteria_73_35_curated
cytochrome c oxidase subunit III
13_1_40cm_scaffold_2539_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3546..3812
DNA (267bp) protein (89aa)
hypothetical protein id=4083667 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_2539_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3809..4426
DNA (618bp) protein (206aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1] Tax=GWA2_Rokubacteria_73_35_curated
Cytochrome c oxidase subunit III id=1881833 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cytochrome c oxidase subunit III
13_1_40cm_scaffold_2539_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4439..4768
DNA (330bp) protein (110aa)
Caa(3)-type oxidase, subunit IV Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Caa(3)-type oxidase, subunit IV id=4083662 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2539_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4800..5168
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037F3656
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_2539_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5165..5938
DNA (774bp) protein (258aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative lipoprotein id=4083660 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative lipoprotein
13_1_40cm_scaffold_2539_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5959..7866
DNA (1908bp) protein (636aa)
putative universal stress protein UspA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative universal stress protein UspA id=14626558 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
putative universal stress protein UspA
13_1_40cm_scaffold_2539_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8092..8451
DNA (360bp) protein (120aa)
putative heme d1 biosynthesis radical SAM protein NirJ2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
radical SAM protein id=14626559 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
radical SAM protein
13_1_40cm_scaffold_2539_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8445..9401
DNA (957bp) protein (319aa)
putative heme d1 biosynthesis radical SAM protein NirJ2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
radical SAM protein id=14626559 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
radical SAM protein
13_1_40cm_scaffold_2539_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

9401..9826
DNA (426bp) protein (142aa)
id=14626560 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14626560 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_2539_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9992..10612
DNA (621bp) protein (207aa)
Putative ATPase, Mrp homolog id=4388291 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mrp; putative ATPase; K03593 ATP-binding protein involved in chromosome partitioning Tax=GWA2_Rokubacteria_73_35_curated
ATPase
13_1_40cm_scaffold_2539_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11079..11582)
DNA (504bp) protein (168aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4388236 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2539_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11859..12116)
DNA (258bp) protein (86aa)
id=3659327 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4123400 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_2539_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12233..13117
DNA (885bp) protein (295aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4388235 bin=GWA2_Methylomirabilis_73_35 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2539_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13114..13986
DNA (873bp) protein (291aa)
Peptidase, M23/M37 family id=4388234 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_2539_20
unknown

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comp(13983..14075)
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_scaffold_2539_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14307..15329)
DNA (1023bp) protein (341aa)
Farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Farnesyl-diphosphate farnesyltransferase (EC:2.5.1.21)
Farnesyl-diphosphate farnesyltransferase id=3659323 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_2539_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15331..15627)
DNA (297bp) protein (99aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4388230 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2539_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15683..16597
DNA (915bp) protein (305aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3784125 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_2539_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16635..16730
DNA (96bp) protein (32aa)
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.-); K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-] Tax=GWA2_Rokubacteria_70_23_curated
Oxidoreductase family protein id=4888003 bin=GWC2_Methylomirabilis_70_24 species=endosymbiont of Riftia pachyptila genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Displaying 24 items

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