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13_1_40cm_scaffold_2628

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2628_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1..1572
DNA (1572bp) protein (524aa)
AMP-dependent synthetase and ligase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AMP-dependent synthetase and ligase id=2312813 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AMP-dependent synthetase and ligase
13_1_40cm_scaffold_2628_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1573..2580
DNA (1008bp) protein (336aa)
Luciferase family protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS13_PARL1
luciferase family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
luciferase family protein
13_1_40cm_scaffold_2628_3
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2577..3698
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFP6_9BRAD
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ46459.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Me
NHL repeat containing protein
13_1_40cm_scaffold_2628_4
unknown

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3698..4045
DNA (348bp) protein (116aa)

This feature has no annotations

13_1_40cm_scaffold_2628_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(4125..4961)
DNA (837bp) protein (279aa)
rhodanese domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] Tax=GWA2_Rokubacteria_73_35_curated
Sulfurtransferase id=2213480 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rhodanese domain-containing protein
13_1_40cm_scaffold_2628_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4982..5725)
DNA (744bp) protein (248aa)
SCO1/SenC family protein/methylamine utilization protein MauG Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCO1/SenC family protein/methylamine utilization protein MauG id=12498377 bin=THIO_MID species=Methylobacter marinus genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SCO1/SenC family protein/methylamine utilization protein MauG
13_1_40cm_scaffold_2628_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5694..7019)
DNA (1326bp) protein (442aa)
56kDa selenium binding protein (SBP56) n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WT91_9BURK
56kDa selenium binding protein (SBP56) {ECO:0000313|EMBL:EHR68964.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales
Selenium-binding protein, putative
13_1_40cm_scaffold_2628_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(7065..8369)
DNA (1305bp) protein (435aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylp
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
UDP-N-acetylglucosamine 1-carboxyvinyltransferase id=3805706 bin=GWB1_Spirochaetes_59_5 species=Treponema brennaborense genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
13_1_40cm_scaffold_2628_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(8986..9693)
DNA (708bp) protein (236aa)
putative phosphoglycolate phosphatase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Phosphoglycolate phosphatase id=4930053 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative hydrolase
13_1_40cm_scaffold_2628_10
R_NC10_66_22, NC10, Bacteria

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comp(9690..10049)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP06_NITGG
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein
13_1_40cm_scaffold_2628_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10027..10647)
DNA (621bp) protein (207aa)
pyrrolidone-carboxylate peptidase (EC:3.4.19.3); K01304 pyroglutamyl-peptidase [EC:3.4.19.3] Tax=GWA2_Rokubacteria_73_35_curated
pyrrolidone-carboxylate peptidase (EC:3.4.19.3)
Pyrrolidone-carboxylate peptidase id=4930056 bin=GWA2_Methylomirabilis_73_35 species=Pyrococcus furiosus genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2628_12
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11847..12704
DNA (858bp) protein (286aa)
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P0Y7_AZOS1
metallophosphoesterase
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA {ECO:0000256|HAMAP-Rule:MF_00905}; Short=3',5'-cyclic AMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; Short=cAMP phosphodiesterase
13_1_40cm_scaffold_2628_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12670..14052)
DNA (1383bp) protein (461aa)
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=GWA2_Rokubacteria_73_35_curated
Dihydrolipoyl dehydrogenase id=4930064 bin=GWA2_Methylomirabilis_73_35 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dihydrolipoamide dehydrogenase
13_1_40cm_scaffold_2628_14
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

comp(14184..14981)
DNA (798bp) protein (266aa)
Methyltransferase type 11 n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HBS4_ANADF
type 11 methyltransferase Tax=RBG_16_Acidobacteria_64_8_curated
methyltransferase
13_1_40cm_scaffold_2628_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15088..16416)
DNA (1329bp) protein (443aa)
dehydrogenase catalytic domain-containing protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex id=4930066 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dehydrogenase catalytic domain-containing protein
13_1_40cm_scaffold_2628_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16422..17195)
DNA (774bp) protein (258aa)
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pyruvate dehydrogenase E1 component subunit beta id=4930068 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transketolase, central region
13_1_40cm_scaffold_2628_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17348..18490)
DNA (1143bp) protein (381aa)
pyruvate dehydrogenase; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pyruvate dehydrogenase (Acetyl-transferring) id=4930070 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate dehydrogenase
13_1_40cm_scaffold_2628_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18531..19409)
DNA (879bp) protein (293aa)
Probable DNA repair protein Anae109_0938 id=4930072 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Ku family containing protein; K10979 DNA end-binding protein Ku Tax=GWA2_Rokubacteria_73_35_curated
Ku family containing protein
13_1_40cm_scaffold_2628_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19425..20888
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCF9_9BACT
hypothetical protein; K07052 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_2628_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20881..22683
DNA (1803bp) protein (601aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=GWA2_Rokubacteria_73_35_curated
DNA ligase D id=4930074 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA ligase D
13_1_40cm_scaffold_2628_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22643..23275
DNA (633bp) protein (211aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=GWA2_Rokubacteria_73_35_curated
DNA ligase D id=4930074 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA ligase D
Displaying 21 items

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