ggKbase home page

13_1_40cm_scaffold_2692

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2692_1
unknown

Not on your lists

2..97
DNA (96bp) protein (32aa)

This feature has no annotations

13_1_40cm_scaffold_2692_2
unknown

Not on your lists

387..494
DNA (108bp) protein (36aa)

This feature has no annotations

13_1_40cm_scaffold_2692_3
unknown

Not on your lists

comp(984..1310)
DNA (327bp) protein (109aa)

This feature has no annotations

13_1_40cm_scaffold_2692_4
Hordeum vulgare, Hordeum, Poales, commelinids, Streptophyta, Viridiplantae

Not on your lists

1682..2602
DNA (921bp) protein (307aa)
Predicted protein {ECO:0000313|EMBL:BAK02607.1}; Flags: Fragment;; TaxID=112509 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Po
13_1_40cm_scaffold_2692_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(2820..3620)
DNA (801bp) protein (267aa)
Putative uncharacterized protein id=4780585 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_scaffold_2692_6
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3932..4888)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000374A602
Acid phosphatase {ECO:0000313|EMBL:EPY00241.1}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulv
acid phosphatase
13_1_40cm_scaffold_2692_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4935..5381)
DNA (447bp) protein (149aa)
Putative transposase id=2589592 bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium 16A2 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
transposase of IS1354, IS256 family Tax=GWC2_Rokubacteria_70_16_curated
transposase of IS1354, IS256 family
13_1_40cm_scaffold_2692_8
unknown

Not on your lists

6136..6405
DNA (270bp) protein (90aa)

This feature has no annotations

13_1_40cm_scaffold_2692_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6672..6821
DNA (150bp) protein (50aa)
XRE family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_scaffold_2692_10
unknown

Not on your lists

6835..6996
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_40cm_scaffold_2692_11
unknown

Not on your lists

7079..7663
DNA (585bp) protein (195aa)

This feature has no annotations

13_1_40cm_scaffold_2692_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7784..8137
DNA (354bp) protein (118aa)
Putative uncharacterized protein id=4780585 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_scaffold_2692_13
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8193..8852
DNA (660bp) protein (220aa)
HAD family hydrolase n=3 Tax=Amycolatopsis mediterranei RepID=D8HVE6_AMYMU
HAD family hydrolase {ECO:0000313|EMBL:KDN18554.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
HAD family hydrolase
13_1_40cm_scaffold_2692_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

8932..10176
DNA (1245bp) protein (415aa)
Extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Extracellular ligand-binding receptor id=4827657 bin=GWA2_Methylomirabilis_73_35 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Extracellular ligand-binding receptor
13_1_40cm_scaffold_2692_15
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

10184..11053
DNA (870bp) protein (290aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Uncharacterized conserved protein id=3830375 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2692_16
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11010..12278)
DNA (1269bp) protein (423aa)
Putative cytosine deaminase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P964_9FIRM
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP69191.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="
amidohydrolase
13_1_40cm_scaffold_2692_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12287..13396)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QMG2_BORBO
LVIVD repeat-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_2692_18
unknown

Not on your lists

13419..13757
DNA (339bp) protein (113aa)

This feature has no annotations

13_1_40cm_scaffold_2692_19
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

14323..15072
DNA (750bp) protein (250aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U856_9CHLR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EFH80067.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Kte
dehydrogenase
13_1_40cm_scaffold_2692_20
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15087..15500
DNA (414bp) protein (138aa)
tautomerase (EC:5.3.2.-)
Tautomerase {ECO:0000313|EMBL:AGT11189.1}; EC=5.3.2.- {ECO:0000313|EMBL:AGT11189.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccu
Tautomerase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XUL7_PARAH
13_1_40cm_scaffold_2692_21

Not on your lists

15497..16522
DNA (1026bp) protein (342aa)
Putative NADP-dependent oxidoreductase protein n=1 Tax=uncultured bacterium CSL144 RepID=G4WVP5_9BACT
Putative NADP-dependent oxidoreductase protein {ECO:0000313|EMBL:AEQ20497.1}; TaxID=1091570 species="Bacteria; environmental samples.;" source="uncultured bacterium CSL144.;"
zinc-binding dehydrogenase family oxidoreductase
13_1_40cm_scaffold_2692_22
unknown

Not on your lists

17034..17126
DNA (93bp) protein (31aa)

This feature has no annotations

Displaying 22 items

View Taxonomy