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13_1_40cm_scaffold_274

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_274_1
unknown

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3..161
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_40cm_scaffold_274_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(173..478)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI00037EA1BC
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_274_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(560..865)
DNA (306bp) protein (102aa)
DNA polymerase subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_274_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1127..1408
DNA (282bp) protein (94aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4905363 bin=GWA2_Methylomirabilis_73_35 species=Saccharomonospora marina genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_274_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1430..1657
DNA (228bp) protein (76aa)
hypothetical protein
Uncharacterized protein id=4905364 bin=GWA2_Methylomirabilis_73_35 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_274_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2038..2667
DNA (630bp) protein (210aa)
alpha/beta hydrolase fold protein; K07019 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alpha/beta hydrolase fold protein id=4018094 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase fold protein
13_1_40cm_scaffold_274_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2664..4187
DNA (1524bp) protein (508aa)
ushA; 5'-nucleotidase (EC:3.1.3.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5'-nucleotidase id=4178156 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative 5'-nucleotidase
13_1_40cm_scaffold_274_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4546..4800
DNA (255bp) protein (85aa)
Two component transcriptional regulator id=4905366 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_274_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4840..5784)
DNA (945bp) protein (315aa)
oppC; peptide ABC transporter membrane protein (EC:3.6.3.24)
Peptide ABC transporter membrane protein id=4905398 bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_274_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5810..6769)
DNA (960bp) protein (320aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IM10_METNO
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_274_11
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6792..8588)
DNA (1797bp) protein (599aa)
peptide ABC transporter substrate-binding protein (EC:3.6.3.24)
Peptide ABC transporter substrate-binding protein id=4797023 bin=GWC2_Methylomirabilis_70_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptide ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
13_1_40cm_scaffold_274_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8748..9407
DNA (660bp) protein (220aa)
resA; thiol-disulfide oxidoreductase ResA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Thiol-disulfide oxidoreductase id=3666472 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
resA; thiol-disulfide oxidoreductase resA
13_1_40cm_scaffold_274_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9404..10144
DNA (741bp) protein (247aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytochrome c biogenesis protein CcdA id=3666473 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccdA; cytochrome c biogenesis protein CcdA
13_1_40cm_scaffold_274_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10762..10968
DNA (207bp) protein (69aa)
homoserine kinase; K00872 homoserine kinase [EC:2.7.1.39] Tax=GWA2_Rokubacteria_73_35_curated
Homoserine kinase id=3666474 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_274_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11027..12193
DNA (1167bp) protein (389aa)
Major facilitator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Major facilitator id=1801598 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Major facilitator
13_1_40cm_scaffold_274_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12228..13361
DNA (1134bp) protein (378aa)
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13)
2'-deoxycytidine 5'-triphosphate deaminase id=3666475 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_274_17
unknown

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comp(13608..13796)
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_40cm_scaffold_274_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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13817..14725
DNA (909bp) protein (303aa)
Transcriptional regulator, LysR family id=3666476 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LysR family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
LysR family transcriptional regulator
13_1_40cm_scaffold_274_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14833..15573
DNA (741bp) protein (247aa)
selenide, water dikinase; K01008 selenide, water dikinase [EC:2.7.9.3] Tax=GWA2_Rokubacteria_73_35_curated
Selenide, water dikinase id=3666477 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
selenide, water dikinase
13_1_40cm_scaffold_274_20
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15909..17024
DNA (1116bp) protein (372aa)
Transglutaminase-like enzyme, predicted cysteine protease n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQJ2_9BURK
Transglutaminase-like enzyme, predicted cysteine protease {ECO:0000313|EMBL:EHR71667.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" sourc
transglutaminase domain-containing protein
13_1_40cm_scaffold_274_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17047..17616
DNA (570bp) protein (190aa)
thiol-disulfide isomerase-like protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Uncharacterized protein id=1374516 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
thiol-disulfide isomerase-like protein
13_1_40cm_scaffold_274_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17627..17905)
DNA (279bp) protein (93aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3735761 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_274_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18008..19051
DNA (1044bp) protein (348aa)
Glycosyl transferase, group 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=14626576 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Glycosyl transferase, group 1
13_1_40cm_scaffold_274_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

19378..20391
DNA (1014bp) protein (338aa)
MoxR-like ATPases (EC:3.6.3.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
MoxR-like ATPases (EC:3.6.3.-) id=14626575 bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
MoxR-like ATPases (EC:3.6.3.-)
13_1_40cm_scaffold_274_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20407..21858
DNA (1452bp) protein (484aa)
id=3287913 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626574 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_274_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

21873..22760
DNA (888bp) protein (296aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3887908 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_274_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22757..27130
DNA (4374bp) protein (1458aa)
chloride channel Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Conserved putative chloride channel id=3887967 bin=GWC2_Methylomirabilis_70_24 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
chloride channel
13_1_40cm_scaffold_274_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

27127..28482
DNA (1356bp) protein (452aa)
peptidase S1 and S6 chymotrypsin/Hap; K12600 superkiller protein 3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14625358 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_274_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

28715..29707
DNA (993bp) protein (331aa)
galT; galactose-1-phosphate uridylyltransferase (EC:2.7.7.12); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=GWA2_Rokubacteria_73_35_curated
Galactose-1-phosphate uridylyltransferase id=3714124 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
galactose-1-phosphate uridylyltransferase
13_1_40cm_scaffold_274_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

29969..30397
DNA (429bp) protein (143aa)
putative transcription factor IscR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Transcription factor IscR id=3887977 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
AsnC family transcriptional regulator
Displaying items 1-30 of 77 in total

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