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13_1_40cm_scaffold_2850

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2850_1
bacterium UASB14, Bacteria

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comp(1..513)
DNA (513bp) protein (171aa)
Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SHG1_NEMVE
CutC family protein {ECO:0000313|EMBL:GAK52301.1}; TaxID=1499966 species="Bacteria.;" source="bacterium UASB14.;"
Copper homeostasis protein cutC
13_1_40cm_scaffold_2850_2
GWC1_Azotobacter_66_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(510..947)
DNA (438bp) protein (146aa)
Chromosome undetermined scaffold_164, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CBD4_PARTE
hypothetical protein Tax=GWC1_Azotobacter_66_9_curated
Hypothetical protein
13_1_40cm_scaffold_2850_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(961..1263)
DNA (303bp) protein (101aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_2850_4

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1447..2520
DNA (1074bp) protein (358aa)
Diguanylate cyclase (GGDEF) domain-containing protein id=4813940 bin=GWC2_Methylomirabilis_70_16 species=Desulfovibrio sp. U5L genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Uncharacterized protein {ECO:0000313|EMBL:KKM05756.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
diguanylate cyclase
13_1_40cm_scaffold_2850_5
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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2533..3042
DNA (510bp) protein (170aa)
Putative uncharacterized protein n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SGK2_PLABD id=5225220 bin=16ft_combo_ws3_JS1 species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
13_1_40cm_scaffold_2850_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3045..3539
DNA (495bp) protein (165aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BYT2_BEUC1
Methylated-DNA--protein-cysteine methyltransferase
13_1_40cm_scaffold_2850_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3801..4037
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GPC5_9BACT
DinB-like domain protein
DinB-like domain protein {ECO:0000313|EMBL:AHG88227.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2850_8
unknown

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4322..4747
DNA (426bp) protein (142aa)

This feature has no annotations

13_1_40cm_scaffold_2850_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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4744..5751
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Deinococcus wulumuqiensis RepID=UPI00034D98DA
hydrolase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
beta-lactamase domain-containing protein
13_1_40cm_scaffold_2850_10
unknown

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5756..6034
DNA (279bp) protein (93aa)

This feature has no annotations

13_1_40cm_scaffold_2850_11
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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6055..7623
DNA (1569bp) protein (523aa)
ligB; ATP-dependent DNA ligase (EC:6.5.1.1)
Probable DNA ligase {ECO:0000256|HAMAP-Rule:MF_00407}; EC=6.5.1.1 {ECO:0000256|HAMAP-Rule:MF_00407};; Polydeoxyribonucleotide synthase [ATP] {ECO:0000256|HAMAP-Rule:MF_00407}; TaxID=1254432 species="B
Probable DNA ligase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y6Z4_SORCE
13_1_40cm_scaffold_2850_12
unknown

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7770..7976
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_scaffold_2850_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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7988..8521
DNA (534bp) protein (178aa)
tonB; putative TonB protein; K03832 periplasmic protein TonB Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_2850_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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8573..9088
DNA (516bp) protein (172aa)
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
RNA polymerase sigma factor id=3395044 bin=GWF2_Lentisphaerae_49_21 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
13_1_40cm_scaffold_2850_15
unknown

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9085..9432
DNA (348bp) protein (116aa)

This feature has no annotations

13_1_40cm_scaffold_2850_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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9429..9872
DNA (444bp) protein (148aa)
Heavy-metal resistance protein
Heavy-metal resistance protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative uncharacterized protein id=4419195 bin=GWF2_Lentisphaerae_50_93 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
13_1_40cm_scaffold_2850_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9884..10279)
DNA (396bp) protein (132aa)
Putative pilin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H6_GEMAT
putative pilin
Putative pilin {ECO:0000313|EMBL:AHG88689.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2850_18
Legionella fallonii, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10412..11314
DNA (903bp) protein (301aa)
Pyridoxine 4-dehydrogenase (EC:1.1.1.65)
Pyridoxine 4-dehydrogenase {ECO:0000313|EMBL:CEG56860.1}; EC=1.1.1.65 {ECO:0000313|EMBL:CEG56860.1};; TaxID=1212491 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellacea
Putative oxidoreductase YdbC n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MS39_CORCM
13_1_40cm_scaffold_2850_19
RBG_13_Aminicenantes_64_14_curated, Aminicenantes, Bacteria

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comp(11330..11962)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00035CFD38
Marine sediment metagenome DNA, contig: S01H4_L05693 Tax=RBG_13_Aminicenantes_64_14_curated
13_1_40cm_scaffold_2850_20
unknown

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comp(12051..12536)
DNA (486bp) protein (162aa)

This feature has no annotations

13_1_40cm_scaffold_2850_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(12539..13318)
DNA (780bp) protein (260aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAB2_GEMAT
protein of unknown function DUF81
Uncharacterized protein {ECO:0000313|EMBL:AHG93560.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2850_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

13321..13827
DNA (507bp) protein (169aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6T8_GEMAT
protein of unknown function DUF456
Uncharacterized protein {ECO:0000313|EMBL:AHG92231.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2850_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(13894..14388)
DNA (495bp) protein (165aa)
Clp amino terminal domain-containing protein {ECO:0000313|EMBL:CDM67061.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphat
13_1_40cm_scaffold_2850_24
unknown

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14594..15427
DNA (834bp) protein (278aa)

This feature has no annotations

13_1_40cm_scaffold_2850_25
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15447..16190)
DNA (744bp) protein (248aa)
fatty acid desaturase n=1 Tax=Ancylobacter sp. FA202 RepID=UPI000363F4B1
Fatty acid desaturase {ECO:0000313|EMBL:KGF69655.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
fatty acid desaturase
Displaying 25 items

View Taxonomy