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13_1_40cm_scaffold_297

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_297_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

46..1065
DNA (1020bp) protein (340aa)
Putative uncharacterized protein id=3315427 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_297_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1097..1342
DNA (246bp) protein (82aa)
hypothetical protein; K09777 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
UPF0296 protein GT20_2421 id=3315424 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_297_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1335..1949
DNA (615bp) protein (205aa)
gmk; guanylate kinase (EC:2.7.4.8) Tax=GWA2_Rokubacteria_73_35_curated
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase id=3315421 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_297_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1949..2161
DNA (213bp) protein (71aa)
DNA-directed RNA polymerase subunit omega (RNAP omega subunit) (Transcriptase subunit omega) (RNA polymerase omega subunit) (EC:2.7.7.6) Tax=GWC2_Rokubacteria_70_16_curated
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega id=3772670 bin=GWC2_Methylomirabilis_70_16 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_297_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2158..3375
DNA (1218bp) protein (406aa)
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] Tax=GWA2_
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5)
Coenzyme A biosynthesis bifunctional protein CoaBC id=3315417 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_297_6
uncultured Acetothermia bacterium, Acetothermia, Bacteria

Not on your lists

3381..5006
DNA (1626bp) protein (542aa)
Phage SPO1 DNA polymerase-related protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SMZ1_9BACT
Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:BAL57527.1}; TaxID=236499 species="Bacteria; Acetothermia; environmental samples.;" source="uncultured Acetothermia bacterium.;"
hypothetical protein
13_1_40cm_scaffold_297_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5007..6824
DNA (1818bp) protein (606aa)
primosomal protein N; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Primosomal protein N' id=3315413 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
primosomal protein N''
13_1_40cm_scaffold_297_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6812..7336
DNA (525bp) protein (175aa)
formylmethionine deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptide deformylase (EC:3.5.1.88)
peptide deformylase id=14625194 bin=bin7_NC10_sister species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_297_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7521..8288
DNA (768bp) protein (256aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase id=5019509 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_297_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8285..9712
DNA (1428bp) protein (476aa)
hypothetical protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4505282 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sun protein
13_1_40cm_scaffold_297_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9734..10387
DNA (654bp) protein (218aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HAD-superfamily hydrolase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=14625197 bin=bin7_NC10_sister species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
13_1_40cm_scaffold_297_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10396..10701
DNA (306bp) protein (102aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cupin id=24474713 bin=RBG_19FT_COMBO_GAL15_69_19 species=Salinarchaeum sp. Harcht-Bsk1 genus=Salinarchaeum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
Cupin 2 barrel domain-containing protein
13_1_40cm_scaffold_297_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(10741..11115)
DNA (375bp) protein (125aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_scaffold_297_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


11218..12567
DNA (1350bp) protein (450aa)
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Signal recognition particle protein id=3772763 bin=GWC2_Methylomirabilis_70_16 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
signal recognition particle subunit FFH/SRP54 (srp54)
13_1_40cm_scaffold_297_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


12572..12841
DNA (270bp) protein (90aa)
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S16 id=4505275 bin=GWF2_Methylomirabilis_70_14 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsP; 30S ribosomal protein S16
13_1_40cm_scaffold_297_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12899..13417
DNA (519bp) protein (173aa)
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
16S rRNA-processing protein RimM id=5019513 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Ribosome maturation factor rimM
13_1_40cm_scaffold_297_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13433..14194
DNA (762bp) protein (254aa)
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA (Guanine-N1)-methyltransferase id=4734641 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (Guanine37-N(1)-) methyltransferase
13_1_40cm_scaffold_297_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


14194..14568
DNA (375bp) protein (125aa)
50S ribosomal protein L19 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L19 id=3772772 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
50S ribosomal protein L19
13_1_40cm_scaffold_297_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14583..15227
DNA (645bp) protein (215aa)
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII id=4734640 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_297_20
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

15297..15986
DNA (690bp) protein (230aa)
Putative membrane protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EG64_9CHLR
Putative membrane protein {ECO:0000313|EMBL:CCF83676.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" sour
putative membrane protein (DUF2306)
13_1_40cm_scaffold_297_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16052..17083
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B79E48
luciferase-like protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
luciferase-like protein
13_1_40cm_scaffold_297_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

17102..18358
DNA (1257bp) protein (419aa)
Extracellular ligand-binding receptor id=2654115 bin=GWC2_Methylomirabilis_70_24 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Extracellular ligand-binding receptor Tax=GWA2_Rokubacteria_70_23_curated
amino acid ABC transporter substrate-binding protein
Displaying 22 items

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