ggKbase home page

13_1_40cm_scaffold_304

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_304_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


2..1537
DNA (1536bp) protein (512aa)
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=GWA2_Rokubacteria_73_35_curated
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase id=4657185 bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_304_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1545..1838
DNA (294bp) protein (98aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4657184 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_304_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1835..2824
DNA (990bp) protein (330aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4657183 bin=GWA2_Methylomirabilis_73_35 species=Thauera linaloolentis genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_304_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2853..3263
DNA (411bp) protein (137aa)
acT domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acT domain-containing protein id=14429420 bin=bin3_NC10 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin3_NC10 organism_group=NC10
acT domain-containing protein
13_1_40cm_scaffold_304_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3349..4131
DNA (783bp) protein (261aa)
TatD family deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Magnesium-dependent deoxyribonuclease, TatD family, and radical SAM domain iron-sulfur oxidoreductase id=3639821 bin=GWC2_Methylomirabilis_70_24 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hydrolase TatD
13_1_40cm_scaffold_304_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4128..5066
DNA (939bp) protein (313aa)
aminopeptidase Y (EC:3.4.11.15)
Peptidase id=4029897 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Peptidase Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_304_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5074..5361)
DNA (288bp) protein (96aa)
id=14628098 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=4029901 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_304_8
unknown

Not on your lists

5423..5515
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_scaffold_304_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5535..6431
DNA (897bp) protein (299aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4029904 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_304_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6431..7177
DNA (747bp) protein (249aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative intramembrane serine protease id=2322384 bin=GWA2_Methylomirabilis_73_35 species=Bacillus halodurans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_304_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7384..8262)
DNA (879bp) protein (293aa)
peptidase S58, DmpA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
L-aminopeptidase/D-esterase id=4429850 bin=GWA2_Methylomirabilis_73_35 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_304_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8331..9383)
DNA (1053bp) protein (351aa)
id=4698146 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4698146 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_304_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9380..9901)
DNA (522bp) protein (174aa)
hypothetical protein id=4429854 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_304_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9947..10258
DNA (312bp) protein (104aa)
id=14625964 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14625964 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_304_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10484..11557)
DNA (1074bp) protein (358aa)
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase id=4429857 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_304_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11625..12317
DNA (693bp) protein (231aa)
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] id=14625966 bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
UTP-Glnb uridylyltransferase GlnD (EC:2.7.7.59)
13_1_40cm_scaffold_304_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12371..14233
DNA (1863bp) protein (621aa)
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] id=14625966 bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glnD; nitrogen regulatory protein P-II uridylyltransferase, GlnD
13_1_40cm_scaffold_304_18
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(14295..14501)
DNA (207bp) protein (69aa)
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_1_40cm_scaffold_304_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14627..16771
DNA (2145bp) protein (715aa)
lytic transglycosylase, catalytic; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lytic transglycosylase id=4793525 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lytic transglycosylase domain-containing protein
13_1_40cm_scaffold_304_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16833..17858
DNA (1026bp) protein (342aa)
Luciferase-like monooxygenase id=4412867 bin=GWF2_Methylomirabilis_70_14 species=Rhodococcus triatomae genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase-like monooxygenase Tax=GWA2_Rokubacteria_70_23_curated
luciferase family protein
13_1_40cm_scaffold_304_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18038..18733)
DNA (696bp) protein (232aa)
Aminotransferase, class I and II Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Aminotransferase, class I and II id=4815551 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_304_22
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(18870..19502)
DNA (633bp) protein (211aa)
tesA; TAP complex multifunctional esterase (EC:3.1.1.5 3.1.2.-); K10804 acyl-CoA thioesterase I [EC:3.1.2.- 3.1.1.5] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
tesA; multifunctional: acyl-CoA thioesterase I; protease I; lysophospholipaseL(I) (EC:3.1.2.- 3.1.1.5)
GDSL-like Lipase/Acylhydrolase id=4815550 bin=GWA2_Methylomirabilis_73_35 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_304_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19529..20197
DNA (669bp) protein (223aa)
ybbA; ABC transporter ATPase (EC:3.6.3.-)
putative ABC transporter, ATPase component; K02003 putative ABC transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC efflux transporter, ATPase subunit id=3112906 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_304_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20194..22740
DNA (2547bp) protein (849aa)
Putative Uncharacterized ABC-type transport system, permease component YbbP id=4815548 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative ABC transporter permease YbbP; K02004 putative ABC transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
putative ABC transporter permease YbbP
13_1_40cm_scaffold_304_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22777..23148
DNA (372bp) protein (124aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glyoxalase/bleomycin resistance protein/dioxygenase id=14626134 bin=bin7_NC10_sister species=Pandoraea sp. SD6-2 genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_304_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

23156..23548
DNA (393bp) protein (131aa)
id=4771416 Tax=GWA2_Rokubacteria_70_23_curated
id=14626178 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_304_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23597..24838)
DNA (1242bp) protein (414aa)
biotin carboxylase-like Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
biotin carboxylase-like id=14626151 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
biotin carboxylase-like
13_1_40cm_scaffold_304_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24870..25151)
DNA (282bp) protein (94aa)
nitrogen-fixing NifU domain-containing protein; K07400 Fe/S biogenesis protein NfuA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Nitrogen fixation protein NifU id=3597763 bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nitrogen-fixing NifU domain-containing protein
13_1_40cm_scaffold_304_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25223..26599)
DNA (1377bp) protein (459aa)
Radical SAM domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Radical SAM domain protein id=3597633 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
radical SAM protein
13_1_40cm_scaffold_304_30
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

26668..26874
DNA (207bp) protein (69aa)
Zinc finger, CDGSH-type id=14625183 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
Displaying items 1-30 of 72 in total

View Taxonomy