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13_1_40cm_scaffold_311

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_311_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3..296)
DNA (294bp) protein (98aa)
Phosphate-transporting ATPase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phosphate-transporting ATPase id=2259322 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_scaffold_311_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(296..796)
DNA (501bp) protein (167aa)
biotin/lipoyl attachment protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acetyl-CoA carboxylase biotin carboxylase subunit, putative id=3247992 bin=GWF2_Methylomirabilis_70_14 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Biotin/lipoic acid binding domain protein
13_1_40cm_scaffold_311_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(793..2289)
DNA (1497bp) protein (499aa)
accC; acetyl CoA carboxylase, biotin carboxylase subunit (EC:6.3.4.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acetyl CoA carboxylase, biotin carboxylase subunit id=2259326 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate carboxylase subunit A
13_1_40cm_scaffold_311_4
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(2343..3125)
DNA (783bp) protein (261aa)
enoyl-CoA hydratase/carnithine racemase Tax=RBG_16_Chloroflexi_63_12_curated
enoyl-CoA hydratase/isomerase id=1247847 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
enoyl-CoA hydratase/carnithine racemase
13_1_40cm_scaffold_311_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3249..3674)
DNA (426bp) protein (142aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nucleoside-diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase id=4681019 bin=GWC2_Methylomirabilis_70_16 species=Acidithiobacillus caldus genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_311_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3671..4543)
DNA (873bp) protein (291aa)
succinyl-CoA synthetase, alpha subunit; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=GWA2_Rokubacteria_73_35_curated
Succinyl-CoA ligase [ADP-forming] subunit alpha id=2259377 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
succinyl-CoA synthetase subunit alpha
13_1_40cm_scaffold_311_7
unknown

Not on your lists

comp(4544..4795)
DNA (252bp) protein (84aa)

This feature has no annotations

13_1_40cm_scaffold_311_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4896..6056)
DNA (1161bp) protein (387aa)
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] id=14430255 bin=bin3_NC10 species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin3_NC10 organism_group=NC10
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
13_1_40cm_scaffold_311_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(6079..6834)
DNA (756bp) protein (252aa)
fumarate reductase iron-sulfur subunit (EC:1.3.5.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] Tax=GWA2_Rokubacteria_70_23_curated
Succinate dehydrogenase subunit B (EC:1.3.5.1)
Succinate dehydrogenase subunit B id=4737577 bin=GWC2_Methylomirabilis_70_24 species=Nocardioides sp. genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_311_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6834..8636)
DNA (1803bp) protein (601aa)
sdhA; Succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1) Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] id=14430250 bin=bin3_NC10 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
sdhA; Succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
13_1_40cm_scaffold_311_11
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(8636..9430)
DNA (795bp) protein (265aa)
integral membrane protein id=14430249 bin=bin3_NC10 species=Streptomyces sp. BoleA5 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
integral membrane protein Tax=CSP1_5_NC10
integral membrane protein
13_1_40cm_scaffold_311_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9427..10005)
DNA (579bp) protein (193aa)
fumarate hydratase, class I; K01678 fumarate hydratase subunit beta [EC:4.2.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
fumX; C-terminal fumarate hydratase, class I; K01678 fumarate hydratase subunit beta [EC:4.2.1.2] id=14626420 bin=bin7_NC10_sister species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta
13_1_40cm_scaffold_311_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10072..10914)
DNA (843bp) protein (281aa)
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2); K01677 fumarate hydratase subunit alpha [EC:4.2.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2); K01677 fumarate hydratase subunit alpha [EC:4.2.1.2] id=14626419 bin=bin7_NC10_sister species=Desulfurobacterium sp. TC5-1 genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin7_NC10_sister organism_group=NC10
fumarate hydratase (EC:4.2.1.2)
13_1_40cm_scaffold_311_14
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(10911..11453)
DNA (543bp) protein (181aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021R7_SOLUE
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABJ84308.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;
13_1_40cm_scaffold_311_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11471..12406)
DNA (936bp) protein (312aa)
malate dehydrogenase, NAD-dependent; K00024 malate dehydrogenase [EC:1.1.1.37] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
mdh; malate dehydrogenase (EC:1.1.1.37)
Malate dehydrogenase id=3859633 bin=GWF2_Methylomirabilis_70_14 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_311_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12406..13668)
DNA (1263bp) protein (421aa)
icd; isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Isocitrate dehydrogenase [NADP] id=3986855 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
icd; isocitrate dehydrogenase
13_1_40cm_scaffold_311_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13815..14612)
DNA (798bp) protein (266aa)
Creatininase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LVM0_HALO1
creatininase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
creatininase
13_1_40cm_scaffold_311_18
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(14731..15720)
DNA (990bp) protein (330aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative uncharacterized protein id=1956523 bin=GWD2_Deltaproteobacteria_55_8 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_scaffold_311_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15789..17114
DNA (1326bp) protein (442aa)
Deacylase n=1 Tax=Bacillus clausii (strain KSM-K16) RepID=Q5WDJ9_BACSK
peptidase M20 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
deacylase
13_1_40cm_scaffold_311_20
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17154..17525)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VWW1_POLNA
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
13_1_40cm_scaffold_311_21
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(17637..17954)
DNA (318bp) protein (106aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein; K01989 putative ABC transport system substrate-binding protein id=14627983 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Displaying 21 items

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