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13_1_40cm_scaffold_3167

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3167_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1..285)
DNA (285bp) protein (95aa)
10 kDa chaperonin id=2197768 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
groS; chaperone Hsp10 (GroES), part of GroE chaperone system Tax=GWA2_Rokubacteria_73_35_curated
groS; chaperone Hsp10 (GroES), part of GroE chaperone system
13_1_40cm_scaffold_3167_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

448..1407
DNA (960bp) protein (320aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (EC:1.1.1.26) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (EC:1.1.1.26)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein id=4560570 bin=GWC2_Methylomirabilis_70_24 species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_3167_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1481..2707)
DNA (1227bp) protein (409aa)
Putative uncharacterized protein id=4526305 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K07502 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_3167_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2714..5059)
DNA (2346bp) protein (782aa)
DEAD/DEAH box helicase; K06877 DEAD/DEAH box helicase domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
Dead/deah box helicase id=4193701 bin=GWC2_Methylomirabilis_70_16 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
DEAD/DEAH box helicase
13_1_40cm_scaffold_3167_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5333..5944
DNA (612bp) protein (204aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Hypothetical membrane protein id=3716451 bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_3167_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6111..6353)
DNA (243bp) protein (81aa)
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Binding-protein-dependent transport systems inner membrane component id=3820149 bin=GWC2_Methylomirabilis_70_16 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
13_1_40cm_scaffold_3167_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6323..6925)
DNA (603bp) protein (201aa)
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Binding-protein-dependent transport systems inner membrane component id=4526366 bin=GWA2_Methylomirabilis_73_35 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_3167_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7197..7520)
DNA (324bp) protein (108aa)
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Dipeptide transport system permease DppB id=4526369 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
13_1_40cm_scaffold_3167_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8031..9404)
DNA (1374bp) protein (458aa)
RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] Tax=GWA2_Rokubacteria_73_35_curated
RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] id=14627050 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
RNA methyltransferase
13_1_40cm_scaffold_3167_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9489..11660
DNA (2172bp) protein (724aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide repeat family protein id=4526378 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_3167_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11677..12402
DNA (726bp) protein (242aa)
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=4526381 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_3167_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12469..13326
DNA (858bp) protein (286aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=3716360 bin=GWF2_Methylomirabilis_70_14 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
13_1_40cm_scaffold_3167_trna_1
unknown

Not on your lists

13428..13500
DNA (73bp)
transferRNA
13_1_40cm_scaffold_3167_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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13526..14470
DNA (945bp) protein (315aa)
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=4526388 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_3167_14
unknown

Not on your lists

comp(14637..15158)
DNA (522bp) protein (174aa)

This feature has no annotations

13_1_40cm_scaffold_3167_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15214..15726
DNA (513bp) protein (171aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=GWA2_Rokubacteria_73_35_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase id=4785576 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_3167_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15733..16980)
DNA (1248bp) protein (416aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Transporter, UIT6 family id=4785574 bin=GWA2_Methylomirabilis_73_35 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_3167_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17085..17279
DNA (195bp) protein (65aa)
30S ribosomal protein S21 id=4785572 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsU; 30S ribosomal protein S21 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpsU; 30S ribosomal protein S21
13_1_40cm_scaffold_3167_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17345..19744
DNA (2400bp) protein (800aa)
MutS2 family protein; K07456 DNA mismatch repair protein MutS2 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
MutS2 protein id=3357842 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
mismatch repair ATPase
13_1_40cm_scaffold_3167_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19744..20907
DNA (1164bp) protein (388aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA primase id=4785564 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA primase
13_1_40cm_scaffold_3167_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20907..21548
DNA (642bp) protein (214aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA primase id=4785564 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_3167_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21545..21622
DNA (78bp) protein (26aa)
rpoD; RNA polymerase sigma factor RpoD (Sigma-70); K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 22 items

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