ggKbase home page

13_1_40cm_scaffold_323

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_323_1
unknown

Not on your lists

comp(316..768)
DNA (453bp) protein (151aa)

This feature has no annotations

13_1_40cm_scaffold_323_2
unknown

Not on your lists

1101..1463
DNA (363bp) protein (121aa)

This feature has no annotations

13_1_40cm_scaffold_323_3
unknown

Not on your lists

1488..1715
DNA (228bp) protein (76aa)

This feature has no annotations

13_1_40cm_scaffold_323_4
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1930..3396)
DNA (1467bp) protein (489aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XW99_9BACT
transcriptional regulatory protein pilR Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
transcriptional regulatory protein pilR
13_1_40cm_scaffold_323_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3623..4093)
DNA (471bp) protein (157aa)
Glyoxalase/bleomycin resistance protein/dioxygenase id=4141959 bin=GWA2_Methylomirabilis_73_35 species=Geodermatophilus obscurus genus=Geodermatophilus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glyoxalase/bleomycin resistance protein/dioxygenase Tax=GWA2_Rokubacteria_73_35_curated
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_40cm_scaffold_323_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4090..4434)
DNA (345bp) protein (115aa)
Putative uncharacterized protein id=4935528 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_scaffold_323_7
Leptospirillum ferrooxidans, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(4456..5967)
DNA (1512bp) protein (504aa)
cobalamin-binding protein n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B7A598
cobalamin B12-binding/Radical SAM family protein
Cobalamin B12-binding/Radical SAM family protein {ECO:0000313|EMBL:BAM06843.1}; TaxID=1162668 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum fe
13_1_40cm_scaffold_323_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6182..7600)
DNA (1419bp) protein (473aa)
alkaline phosphatase; K01113 alkaline phosphatase D [EC:3.1.3.1] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Alkaline phosphatase n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HNM8_CYAP4
alkaline phosphatase
13_1_40cm_scaffold_323_9
unknown

Not on your lists

comp(7703..8224)
DNA (522bp) protein (174aa)

This feature has no annotations

13_1_40cm_scaffold_323_10
unknown

Not on your lists

comp(8397..8636)
DNA (240bp) protein (80aa)

This feature has no annotations

13_1_40cm_scaffold_323_11
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8659..8859
DNA (201bp) protein (67aa)
sulfoacetaldehyde acetyltransferase (EC:2.2.1.6)
Uncharacterized protein {ECO:0000313|EMBL:ETX08894.1}; Flags: Fragment;; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheone
Putative Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain protein id=4947260 bin=GWA2_Methylomirabilis_73_35 species=uncultured marine microorganism HF4000_APKG10K24 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_323_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8977..9726)
DNA (750bp) protein (250aa)
mce; methylmalonyl-CoA epimerase (EC:5.1.99.1); K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lactoylglutathione lyase and related lyases id=2216086 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium HF0200_09I09 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative methylmalonyl-CoA epimerase
13_1_40cm_scaffold_323_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10016..11143)
DNA (1128bp) protein (376aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Predicted protein id=2216088 bin=GWA2_Methylomirabilis_73_35 species=Physcomitrella patens genus=Physcomitrella taxon_order=Funariales taxon_class=Bryopsida phylum=Streptophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADP-dependent oxidoreductase domain protein
13_1_40cm_scaffold_323_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11187..11546)
DNA (360bp) protein (120aa)
Copper resistance protein CopC Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative Copper resistance protein, copC family id=4737956 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
copper resistance protein CopC
13_1_40cm_scaffold_323_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11546..12580)
DNA (1035bp) protein (345aa)
N-acetyltransferase GCN5 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
putative acetyltransferase id=4737960 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoriales cyanobacterium JSC-12 genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GCN5-related N-acetyltransferase
13_1_40cm_scaffold_323_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12577..13461)
DNA (885bp) protein (295aa)
2-hydroxy-3-oxopropionate reductase; K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-hydroxy-3-oxopropionate reductase id=4931803 bin=GWC2_Methylomirabilis_70_16 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
2-hydroxy-3-oxopropionate reductase
13_1_40cm_scaffold_323_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13609..15555)
DNA (1947bp) protein (649aa)
aldehyde:ferredoxin oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aldehyde:ferredoxin oxidoreductase id=14626789 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Crenarchaeota tax=bin7_NC10_sister organism_group=NC10
aldehyde:ferredoxin oxidoreductase
13_1_40cm_scaffold_323_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15552..16877)
DNA (1326bp) protein (442aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=14626790 bin=bin7_NC10_sister species=Methylomicrobium alcaliphilum genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
13_1_40cm_scaffold_323_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16877..17347)
DNA (471bp) protein (157aa)
Fe-S-cluster-containing hydrogenase components 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iron-sulfur cluster-binding protein; potential subunit of aldehyde oxidoreductase id=14626791 bin=bin7_NC10_sister species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
iron-sulfur cluster-binding protein; potential subunit of aldehyde oxidoreductase
13_1_40cm_scaffold_323_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17344..17661)
DNA (318bp) protein (106aa)
GYD domain superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GYD domain superfamily id=14626792 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
GYD domain superfamily
13_1_40cm_scaffold_323_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17716..18618)
DNA (903bp) protein (301aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase id=3261976 bin=GWA2_Methylomirabilis_73_35 species=Rhipicephalus pulchellus genus=Rhipicephalus taxon_order=Ixodida taxon_class=Arachnida phylum=Arthropoda tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxyisobutyrate dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_323_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18679..19605
DNA (927bp) protein (309aa)
hypothetical protein; K03298 drug/metabolite transporter, DME family Tax=GWA2_Rokubacteria_73_35_curated
Membrane protein, putative id=4365892 bin=GWC2_Methylomirabilis_70_24 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_323_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19667..20038)
DNA (372bp) protein (124aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4365894 bin=GWC2_Methylomirabilis_70_24 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_323_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20035..20253)
DNA (219bp) protein (73aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3814680 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_323_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20272..21717
DNA (1446bp) protein (482aa)
carbohydrate kinase FGGY; K00851 gluconokinase [EC:2.7.1.12] Tax=GWA2_Rokubacteria_73_35_curated
carbohydrate kinase; K00851 gluconokinase [EC:2.7.1.12] id=14627818 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
carbohydrate kinase
13_1_40cm_scaffold_323_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21725..22480
DNA (756bp) protein (252aa)
pgl; 6-phosphogluconolactonase (EC:3.1.1.31) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pgl; 6-phosphogluconolactonase (EC:3.1.1.31)
6-phosphogluconolactonase (6PGL) id=3814683 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_323_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22484..23977
DNA (1494bp) protein (498aa)
glucose-6-phosphate 1-dehydrogenase; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] id=14625649 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
13_1_40cm_scaffold_323_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24035..24439)
DNA (405bp) protein (135aa)
putative lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
putative lipoprotein id=14625651 bin=bin7_NC10_sister species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_323_29
unknown

Not on your lists

comp(24452..24586)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_scaffold_323_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24602..25360)
DNA (759bp) protein (253aa)
short-chain dehydrogenase/reductase sdr; K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-deoxy-D-gluconate 3-dehydrogenase id=4472645 bin=GWA2_Methylomirabilis_73_35 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase sdr
Displaying items 1-30 of 31 in total

View Taxonomy