ggKbase home page

13_1_40cm_scaffold_3307

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3307_1
unknown

Not on your lists

1..318
DNA (318bp) protein (106aa)

This feature has no annotations

13_1_40cm_scaffold_3307_2
GWA2_OD1_42_9_A833, Azambacteria, Parcubacteria, Bacteria

Not on your lists

comp(683..1543)
DNA (861bp) protein (287aa)
hypothetical protein RflaF_06226 Tax=GWA2_OD1_42_9_A833
SPFH domain, Band 7 family protein id=14625744 bin=bin7_NC10_sister species=Singularimonas variicoloris genus=Singularimonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
SPFH domain, Band 7 family protein
13_1_40cm_scaffold_3307_3
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

1855..2685
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QPL4_SPILD
hypothetical protein Tax=RBG_16_RIF_CHLX_72_14_curated
hypothetical protein
13_1_40cm_scaffold_3307_4
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(3463..4044)
DNA (582bp) protein (194aa)
Uracil-DNA glycosylase superfamily n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CA47_SPHTD
uracil-DNA glycosylase superfamily
Uracil-DNA glycosylase superfamily {ECO:0000313|EMBL:ACZ40690.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobact
13_1_40cm_scaffold_3307_5
Bacillus bataviensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4558..5988)
DNA (1431bp) protein (477aa)
exaA; quinoprotein ethanol dehydrogenase (EC:1.1.99.8)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035DD4AD
Putative pyrrolo-quinoline quinone {ECO:0000313|EMBL:EKN62401.1}; TaxID=1117379 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus bataviensis LMG 21833.;"
13_1_40cm_scaffold_3307_6
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6568..8433
DNA (1866bp) protein (622aa)
ggt; gamma-glutamyltranspeptidase (EC:2.3.2.2) rbh
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003676E96
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:EHR72848.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium
13_1_40cm_scaffold_3307_7
unknown

Not on your lists

8635..8988
DNA (354bp) protein (118aa)

This feature has no annotations

13_1_40cm_scaffold_3307_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9172..9798)
DNA (627bp) protein (209aa)
hypothetical protein; K07323 putative toluene tolerance protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Organic solvent tolerance ABC transporter, periplasmic substrate-binding protein id=4998226 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
organic solvent tolerance ABC transporter substrate-binding protein
13_1_40cm_scaffold_3307_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10496..10663)
DNA (168bp) protein (56aa)
Uncharacterized protein id=2224572 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_3307_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10698..11207
DNA (510bp) protein (170aa)
id=3805159 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_3307_11
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11639..12154
DNA (516bp) protein (172aa)
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen Tax=GWC2_Geobacteraceae_58_44_curated
putative thiol-disulfide oxidoreductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=3236513 bin=GWC1_Spirochaetes_27_15 species=Clostridium beijerinckii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
13_1_40cm_scaffold_3307_12
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12183..12395
DNA (213bp) protein (71aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW96974.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
13_1_40cm_scaffold_3307_13
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

12483..12731
DNA (249bp) protein (83aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=RBG_16_NC10_65_8_curated
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=4646434 bin=GWA2_Methylomirabilis_73_35 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_3307_14
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(12653..13942)
DNA (1290bp) protein (430aa)
Transmembrane efflux protein n=1 Tax=Actinomyces sp. oral taxon 448 str. F0400 RepID=F9EES4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KIE09480.1}; TaxID=1479485 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
alpha/beta hydrolase
13_1_40cm_scaffold_3307_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14741..16216)
DNA (1476bp) protein (492aa)
glycosyl transferase family 39 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase family 39 id=3951911 bin=GWF2_Methylomirabilis_70_14 species=Terriglobus saanensis genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dolichyl-phosphate-mannose-protein mannosyltransferase family protein
13_1_40cm_scaffold_3307_16
RLO_Deltaproteobacteria_40_28, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16213..16704)
DNA (492bp) protein (164aa)
asparagine synthase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_40_28_curated
Asparagine synthetase id=4814774 bin=GWC2_Methylomirabilis_70_16 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
asparagine synthase
13_1_40cm_scaffold_3307_17
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(17187..17720)
DNA (534bp) protein (178aa)
GCN5-related N-acetyltransferase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TDA6_9CHLR
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EFH88251.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobac
GCN5-related N-acetyltransferase
13_1_40cm_scaffold_3307_18
unknown

Not on your lists

comp(17717..18013)
DNA (297bp) protein (99aa)

This feature has no annotations

13_1_40cm_scaffold_3307_19
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18619..18885)
DNA (267bp) protein (89aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=483219 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystoba
2-dehydropantoate 2-reductase n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CMT9_MYXFH
2-dehydropantoate 2-reductase
13_1_40cm_scaffold_3307_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18887..19183)
DNA (297bp) protein (99aa)
Possible acetyl-CoA synthetase id=3311261 bin=GWC2_Methylomirabilis_70_16 species=Saccharopolyspora erythraea genus=Saccharopolyspora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acetyl-CoA synthetase Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_3307_21
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19622..20035
DNA (414bp) protein (138aa)
Nucleoside 2-deoxyribosyltransferase n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKZ0_METZD
nucleoside 2-deoxyribosyltransferase
Nucleoside 2-deoxyribosyltransferase {ECO:0000313|EMBL:AEH60688.1}; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Metha
13_1_40cm_scaffold_3307_22
unknown

Not on your lists

20100..20312
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_scaffold_3307_23
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(20468..20668)
DNA (201bp) protein (67aa)
Periplasmic binding protein n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QGN3_9CYAN
periplasmic binding protein
Periplasmic binding protein {ECO:0000313|EMBL:AGY58132.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
Displaying 23 items

View Taxonomy