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13_1_40cm_scaffold_350

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_350_1
unknown

Not on your lists

2..154
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_40cm_scaffold_350_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(133..1065)
DNA (933bp) protein (311aa)
murQ; N-acetylmuramic acid 6-phosphate etherase; K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] Tax=GWA2_Rokubacteria_73_35_curated
N-acetylmuramic acid 6-phosphate etherase id=3431007 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
murQ; N-acetylmuramic acid-6-phosphate etherase
13_1_40cm_scaffold_350_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1118..2260
DNA (1143bp) protein (381aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterised conserved protein UCP016719 id=4485812 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_350_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2257..2595)
DNA (339bp) protein (113aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3431004 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_350_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2648..3175)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI0003764836
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_scaffold_350_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3175..3726)
DNA (552bp) protein (184aa)
uncharacterized LOC101093251 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
UPI0001586237 related cluster id=3431001 bin=GWA2_Methylomirabilis_73_35 species=Botryotinia fuckeliana genus=Botryotinia taxon_order=Helotiales taxon_class=Leotiomycetes phylum=Ascomycota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_350_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3739..4188)
DNA (450bp) protein (150aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3430999 bin=GWA2_Methylomirabilis_73_35 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_350_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4268..5890
DNA (1623bp) protein (541aa)
beta-N-acetylglucosaminidase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative beta-N-acetylglucosaminidase id=4485808 bin=GWC2_Methylomirabilis_70_24 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
beta-glucosidase
13_1_40cm_scaffold_350_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6037..6876
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Kushneria aurantia RepID=UPI0003693BE1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJD43307.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
13_1_40cm_scaffold_350_10
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

6969..8783
DNA (1815bp) protein (605aa)
SSS sodium solute transporter superfamily n=1 Tax=Akkermansia muciniphila CAG:154 RepID=R6J3K0_9BACT
SSS sodium solute transporter superfamily protein
Tax=BJP_IG2102_BRC1_58_13
13_1_40cm_scaffold_350_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8953..9585)
DNA (633bp) protein (211aa)
hypothetical protein; K07323 putative toluene tolerance protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Organic solvent tolerance ABC transporter, periplasmic substrate-binding protein id=4998226 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_350_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9885..10694
DNA (810bp) protein (270aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4998225 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_350_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10691..11044
DNA (354bp) protein (118aa)
hypothetical protein id=4998224 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_350_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11051..12028)
DNA (978bp) protein (326aa)
magnesium and cobalt transport protein CorA; K03284 magnesium transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
magnesium and cobalt transport protein CorA; K03284 magnesium transporter id=14626346 bin=bin7_NC10_sister species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
magnesium and cobalt transport protein CorA
13_1_40cm_scaffold_350_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(12025..13275)
DNA (1251bp) protein (417aa)
amino acid transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Amino acid/polyamine/organocation transporter, APC superfamily id=4998223 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid transporter
13_1_40cm_scaffold_350_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13340..13564)
DNA (225bp) protein (75aa)
Putative uncharacterized protein id=4998222 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_40cm_scaffold_350_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13557..14606)
DNA (1050bp) protein (350aa)
malate/L-lactate dehydrogenase; K13574 uncharacterized oxidoreductase [EC:1.1.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029AEC96
malate/L-lactate dehydrogenase
13_1_40cm_scaffold_350_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14743..15957
DNA (1215bp) protein (405aa)
formyl-CoA transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CoA-transferase III family protein id=4998221 bin=GWA2_Methylomirabilis_73_35 species=Kosakonia radicincitans genus=Kosakonia taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Formyl-CoA transferase
13_1_40cm_scaffold_350_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15925..17370)
DNA (1446bp) protein (482aa)
Protoporphyrinogen oxidase id=4998220 bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protoporphyrinogen oxidase Tax=GWA2_Rokubacteria_73_35_curated
protoporphyrinogen oxidase
13_1_40cm_scaffold_350_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17427..17612)
DNA (186bp) protein (62aa)
ferrochelatase (EC:4.99.1.1) Tax=GWA2_Rokubacteria_73_35_curated
ferrochelatase (EC:4.99.1.1)
Ferrochelatase id=4998219 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_350_21
unknown

Not on your lists

17702..17935
DNA (234bp) protein (78aa)

This feature has no annotations

13_1_40cm_scaffold_350_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18297..19196)
DNA (900bp) protein (300aa)
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uroporphyrinogen decarboxylase id=4216374 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase
13_1_40cm_scaffold_350_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19441..19998
DNA (558bp) protein (186aa)
mdlC; benzoylformate decarboxylase (EC:4.1.1.7); K01576 benzoylformate decarboxylase [EC:4.1.1.7] Tax=GWA2_Rokubacteria_73_35_curated
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase id=3713089 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acetolactate synthase
13_1_40cm_scaffold_350_24
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20337..21356)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037C9B61
Uncharacterized protein {ECO:0000313|EMBL:ETW99261.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase-like monooxygenase
13_1_40cm_scaffold_350_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21389..22375)
DNA (987bp) protein (329aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4216379 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_350_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22377..24029)
DNA (1653bp) protein (551aa)
Acyl-CoA synthetase/AMP-acid ligase id=3713098 bin=GWF2_Methylomirabilis_70_14 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA synthetase/AMP-acid ligase Tax=GWA2_Rokubacteria_73_35_curated
AMP-dependent synthetase
13_1_40cm_scaffold_350_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24247..25566
DNA (1320bp) protein (440aa)
hypothetical protein; K09927 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3716770 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_350_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25689..26723
DNA (1035bp) protein (345aa)
citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
citrate synthase (EC:2.3.3.1)
Citrate synthase id=3963832 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_350_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26725..28710
DNA (1986bp) protein (662aa)
acnA; aconitate hydratase (EC:4.2.1.3) Tax=GWA2_Rokubacteria_73_35_curated
aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase id=3841313 bin=GWF2_Methylomirabilis_70_14 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_350_30
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

28724..29821
DNA (1098bp) protein (366aa)
PrpF family protein; K09788 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3963829 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PrpF family protein
Displaying items 1-30 of 33 in total

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