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13_1_40cm_scaffold_3510

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3510_1
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1..951
DNA (951bp) protein (317aa)
pdp; pyrimidine-nucleoside phosphorylase (EC:2.4.2.2)
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:BAH37835.1}; EC=2.4.2.2 {ECO:0000313|EMBL:BAH37835.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gem
Pyrimidine-nucleoside phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6H5_GEMAT
13_1_40cm_scaffold_3510_2
unknown

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comp(948..1154)
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_scaffold_3510_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1154..3109)
DNA (1956bp) protein (652aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=861299 species="Bacteria; Ge
DNA gyrase subunit B n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6J5_GEMAT
DNA gyrase B subunit
13_1_40cm_scaffold_3510_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(3117..3329)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6J6_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
protein of unknown function DUF721
13_1_40cm_scaffold_3510_5
unknown

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comp(3498..3755)
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_scaffold_3510_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(3839..4621)
DNA (783bp) protein (261aa)
enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Short chain enoyl-CoA hydratase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01T70_SOLUE
Enoyl-CoA hydratase/isomerase
13_1_40cm_scaffold_3510_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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4793..5824
DNA (1032bp) protein (344aa)
initiation factor 2B related family protein; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Methylthioribose-1-phosphate isomerase n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=MTNA_PELTS
translation initiation factor 2B subunit
13_1_40cm_scaffold_3510_8
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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5821..7296
DNA (1476bp) protein (492aa)
glpK; glycerol kinase (EC:2.7.1.30)
Glycerol kinase {ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|SAAS:SAAS00029376};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" so
Glycerol kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K0_GEMAT
13_1_40cm_scaffold_3510_9

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7293..7478
DNA (186bp) protein (62aa)
Hypothetical conserved protein n=1 Tax=uncultured prokaryote RepID=H5SIR4_9ZZZZ
Hypothetical conserved protein {ECO:0000313|EMBL:BAL56050.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
13_1_40cm_scaffold_3510_10
GWA2_Deltaproteobacteria_54_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7439..7654
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LL57_SYNFM
hypothetical protein
hypothetical protein; K06966 Tax=GWA2_Deltaproteobacteria_54_12_curated
13_1_40cm_scaffold_3510_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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7662..8066
DNA (405bp) protein (135aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K1_GEMAT
ccmE; cytochrome c-type biogenesis protein CcmE; K02197 cytochrome c-type biogenesis protein CcmE Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
CcmE/CycJ protein
13_1_40cm_scaffold_3510_12
RBG_13_Chloroflexi_60_13_curated, Chloroflexi, Bacteria

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comp(8706..9248)
DNA (543bp) protein (181aa)
hypothetical protein Tax=RBG_13_Chloroflexi_60_13_curated
13_1_40cm_scaffold_3510_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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9652..9966
DNA (315bp) protein (105aa)
Cytochrome c-type biogenesis protein CcmF n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K2_GEMAT
ccmF; cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF Tax=GWC2_Gemmatimonadetes_71_10_curated
cytochrome c assembly protein
13_1_40cm_scaffold_3510_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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9963..10556
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K3_GEMAT
hypothetical protein; K02200 cytochrome c-type biogenesis protein CcmH Tax=RBG_16_Gemmatimonadetes_66_8_curated
cytochrome C biogenesis protein
13_1_40cm_scaffold_3510_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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10549..11052
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K4_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_3510_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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11112..11600
DNA (489bp) protein (163aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_3510_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(11784..13475)
DNA (1692bp) protein (564aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K7_GEMAT
hypothetical protein; K01992 ABC-2 type transport system permease protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_3510_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13472..14230)
DNA (759bp) protein (253aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K8_GEMAT
putative ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative ABC transporter ATP-binding protein
13_1_40cm_scaffold_3510_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(14227..15651)
DNA (1425bp) protein (475aa)
transglutaminase-like enzyme, predicted cysteine protease Tax=RBG_16_Gemmatimonadetes_66_8_curated
Transglutaminase-like protein id=3846337 bin=GWC2_Nitrospirae_57_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
transglutaminase domain-containing protein
13_1_40cm_scaffold_3510_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15648..15980)
DNA (333bp) protein (111aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_3510_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16086..16934)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036ADC37
TPR repeat-containing protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_scaffold_3510_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

17159..19123
DNA (1965bp) protein (655aa)
UvrABC system protein A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6L0_GEMAT
uvrA; UvrABC system protein A; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
UvrABC system protein A
Displaying 22 items

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