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13_1_40cm_scaffold_377

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_377_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(2..193)
DNA (192bp) protein (64aa)
h16_A2129; Zn-dependent hydrolase id=14625954 bin=bin7_NC10_sister species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
h16_A2129; Zn-dependent hydrolase Tax=CSP1_6_Rokubacteria
Metal-dependent hydrolase
13_1_40cm_scaffold_377_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

541..1080
DNA (540bp) protein (180aa)
cobalbumin biosynthesis protein (EC:2.7.7.62); K02231 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_cu
cobalbumin biosynthesis protein (EC:2.7.7.62)
adenosylcobinamide kinase id=2285111 bin=GWA2_Methylomirabilis_73_35 species=Citromicrobium bathyomarinum genus=Citromicrobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_377_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1077..2144
DNA (1068bp) protein (356aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] Tax=GWA2_Rokubacteria_
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase id=2810420 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_377_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2141..3037
DNA (897bp) protein (299aa)
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Periplasmic binding protein id=2285114 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic binding protein
13_1_40cm_scaffold_377_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3058..4050
DNA (993bp) protein (331aa)
btuC; vitamin B12 import system permease protein BtuC; K02015 iron complex transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
btuC; vitamin B12 import system permease protein BtuC; K02015 iron complex transport system permease protein id=14627281 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
Fe3+-siderophore ABC transporter permease
13_1_40cm_scaffold_377_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4259..5059
DNA (801bp) protein (267aa)
putative Vitamin B12 import system, ATP-binding protein BtuD (EC:3.6.3.-); K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] Tax=GWA2_Rokubacteria_73_35_curated
putative Vitamin B12 import system, ATP-binding protein BtuD (EC:3.6.3.-)
Iron-enterobactin transporter ATP-binding protein id=2285115 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_377_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5056..5709
DNA (654bp) protein (218aa)
Uncharacterized conserved protein id=2285119 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_377_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5706..6587
DNA (882bp) protein (294aa)
TonB family protein id=2285121 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TonB family protein; K03832 periplasmic protein TonB Tax=GWA2_Rokubacteria_73_35_curated
TonB family protein
13_1_40cm_scaffold_377_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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6589..7098
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XV92_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP37147.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
13_1_40cm_scaffold_377_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7869..8834
DNA (966bp) protein (322aa)
cobalamin biosynthesis protein CobD Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobalamin biosynthesis protein CobD id=2285125 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin biosynthesis protein CobD
13_1_40cm_scaffold_377_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


9646..11307
DNA (1662bp) protein (554aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase id=2610199 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_377_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11307..11927
DNA (621bp) protein (207aa)
sporulation domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sporulation and cell division repeat protein id=2285129 bin=GWA2_Methylomirabilis_73_35 species=Xanthomonas fragariae genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sporulation protein
13_1_40cm_scaffold_377_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11929..12459
DNA (531bp) protein (177aa)
putative bifunctional protein tilS/hprT; K15780 bifunctional protein TilS/HprT [EC:6.3.4.19 2.4.2.8] Tax=GWA2_Rokubacteria_73_35_curated
Putative bifunctional protein tilS/hprT id=2285131 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HGPRTase: hypoxanthine phosphoribosyltransferase
13_1_40cm_scaffold_377_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12507..14324
DNA (1818bp) protein (606aa)
ftsH; cell division protein FtsH; ATP-dependent zinc-metallo protease (EC:3.4.24.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ftsH; cell division protein FtsH; ATP-dependent zinc-metallo protease (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH id=2610206 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_377_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14404..15240
DNA (837bp) protein (279aa)
folP; dihydropteroate synthase; K00796 dihydropteroate synthase [EC:2.5.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dihydropteroate synthase id=4773680 bin=GWC2_Methylomirabilis_70_16 species=Thermogladius cellulolyticus genus=Thermogladius taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dihydropteroate synthase
13_1_40cm_scaffold_377_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15266..16618
DNA (1353bp) protein (451aa)
glmM; phosphoglucosamine mutase; K03431 phosphoglucosamine mutase [EC:5.4.2.10] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phosphoglucosamine mutase id=4870787 bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
glmM; phosphoglucosamine mutase
13_1_40cm_scaffold_377_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16615..16998
DNA (384bp) protein (128aa)
holo-acyl-carrier-protein synthase; K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Holo-[acyl-carrier-protein] synthase id=4773676 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acpS; acyl carrier protein 4'-phosphopantetheinyltransferase
13_1_40cm_scaffold_377_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16964..17734
DNA (771bp) protein (257aa)
id=4870785 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=3047192 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_377_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17740..19296
DNA (1557bp) protein (519aa)
yjeF; carbohydrate kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein yjeF id=4773674 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
yjeF; carbohydrate kinase
13_1_40cm_scaffold_377_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19280..19702
DNA (423bp) protein (141aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein family UPF0079, ATPase id=4773673 bin=GWC2_Methylomirabilis_70_16 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ATPase or kinase
13_1_40cm_scaffold_377_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19766..20440
DNA (675bp) protein (225aa)
DNA repair protein RadC; K03630 DNA repair protein RadC Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA repair protein RadC id=4773671 bin=GWC2_Methylomirabilis_70_16 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
DNA repair protein RadC
13_1_40cm_scaffold_377_22
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(20463..20705)
DNA (243bp) protein (81aa)
id=4430353 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
id=4430353 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_377_23
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(21027..22013)
DNA (987bp) protein (329aa)
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] id=14627933 bin=bin7_NC10_sister species=Mycobacterium sp. 155 genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
dihydroorotate dehydrogenase (EC:1.3.3.1)
13_1_40cm_scaffold_377_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22082..22879
DNA (798bp) protein (266aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=14627958 bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_377_25
unknown

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22876..22977
DNA (102bp) protein (34aa)

This feature has no annotations

13_1_40cm_scaffold_377_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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22949..24139
DNA (1191bp) protein (397aa)
Beta-ketoacyl synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=3713931 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_377_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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24136..24849
DNA (714bp) protein (238aa)
beta-ketoacyl synthase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4785120 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative 3-oxoacyl-ACP synthase I
13_1_40cm_scaffold_377_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

25111..25293
DNA (183bp) protein (61aa)
hypothetical protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K02078 acyl carrier protein id=14627962 bin=bin7_NC10_sister species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Displaying 28 items

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