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13_1_40cm_scaffold_4428

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_4428_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..335)
DNA (333bp) protein (111aa)
metalloendopeptidase-like membrane protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_scaffold_4428_2
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(332..1228)
DNA (897bp) protein (299aa)
Chromosome partitioning protein ParB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J2_GEMAT
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family Tax=GWC2_Gemmatimonadetes_71_10_curated
parB-like partition protein
13_1_40cm_scaffold_4428_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1225..2061)
DNA (837bp) protein (279aa)
ParA family protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MZN8_CORCM
parA; chromosome partitioning protein ParA; K03496 chromosome partitioning protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cobyrinic acid ac-diamide synthase
13_1_40cm_scaffold_4428_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2221..4089)
DNA (1869bp) protein (623aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J5_GEMAT
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme Tax=RBG_16_Gemmatimonadetes_66_8_curated
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
13_1_40cm_scaffold_4428_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4163..4537)
DNA (375bp) protein (125aa)
S23 ribosomal protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein id=14424288 bin=bin11_novelCP species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin11_novelCP organism_group=Unknown_CP
S23 ribosomal protein
13_1_40cm_scaffold_4428_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4676..5899)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344BF53
hypothetical membrane protein; K01992 ABC-2 type transport system permease protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical membrane protein
13_1_40cm_scaffold_4428_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5892..6854)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDA7F
putative ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
ABC transporter related protein
13_1_40cm_scaffold_4428_8
RLO_PLX_64_10, Bacteria

Not on your lists

comp(6869..7321)
DNA (453bp) protein (151aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
hypothetical protein id=14431319 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_4428_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(7318..8586)
DNA (1269bp) protein (423aa)
sufS; cysteine desulfurase (EC:2.8.1.7) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Cysteine desulfurase id=2101213 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
sufS; cysteine desulfurase, SufS subfamily
13_1_40cm_scaffold_4428_10
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(8583..9827)
DNA (1245bp) protein (415aa)
FeS assembly protein SufD n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09CC4_STIAD
sufD; putative iron-sulfur cluster assembly protein SufD; K09015 Fe-S cluster assembly protein SufD Tax=RBG_16_Acidobacteria_68_9_curated
sufD; FeS assembly protein SufD
13_1_40cm_scaffold_4428_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9824..10609)
DNA (786bp) protein (262aa)
sufC; putative iron-sulfur cluster assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Fe-S cluster assembly ATP-binding protein SufC id=4899150 bin=GWA2_OP3_52_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
FeS assembly ATPase SufC
13_1_40cm_scaffold_4428_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(10620..12005)
DNA (1386bp) protein (462aa)
FeS assembly protein SufB n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWY7_NITHN
sufB; transport protein associated with Fe-S cluster assembly Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
FeS assembly protein SufB
13_1_40cm_scaffold_4428_13
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(12002..12670)
DNA (669bp) protein (223aa)
Putative transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC41_GEMAT
putative transcriptional regulator Tax=RBG_16_Acidobacteria_68_9_curated
putative transcriptional regulator
13_1_40cm_scaffold_4428_14
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(12759..14114)
DNA (1356bp) protein (452aa)
serine/threonine protein kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
transcriptional activator domain-containing protein
Serine/threonine protein kinase with TPR repeats id=4207774 bin=GWC2_Ignavibacteria_56_12 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
13_1_40cm_scaffold_4428_15
unknown

Not on your lists

14578..14778
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_scaffold_4428_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

14827..15375
DNA (549bp) protein (183aa)
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88] Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptide deformylase
Peptide deformylase id=4811764 bin=GWC2_Ignavibacteria_56_12 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
13_1_40cm_scaffold_4428_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

15517..16878
DNA (1362bp) protein (454aa)
Phosphomethylpyrimidine synthase n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R2W6_ISOPI
thiC; thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC Tax=GWC2_Gemmatimonadetes_71_10_curated
hydroxymethylpyrimidine synthase
13_1_40cm_scaffold_4428_18
unknown

Not on your lists

comp(16887..17045)
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_40cm_scaffold_4428_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

17089..18087
DNA (999bp) protein (333aa)
Peptidase M28 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFG1_GEOUR
peptidase M28 family peptidase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
peptidase M28
13_1_40cm_scaffold_4428_20
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18026..18901)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y5D0_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP39999.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
13_1_40cm_scaffold_4428_21
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(18898..19512)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XTW0_SORCE
putative metal-dependent hydrolase Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
hypothetical protein
13_1_40cm_scaffold_4428_22
Mycobacterium hassiacum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19586..19987)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Actinopolyspora mortivallis RepID=UPI00035D3021
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EKF25598.1}; TaxID=1122247 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium
transcriptional regulator
13_1_40cm_scaffold_4428_23
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

20790..21062
DNA (273bp) protein (91aa)
Ferredoxin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC37_GEMAT
ferredoxin Tax=GWC2_Gemmatimonadetes_71_10_curated
4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein
13_1_40cm_scaffold_4428_24
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(21063..21548)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5R9_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH37579.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_1_40cm_scaffold_4428_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21587..22807)
DNA (1221bp) protein (407aa)
Putative hydrolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC35_GEMAT
putative hydrolase Tax=GWC2_Gemmatimonadetes_71_10_curated
putative hydrolase
13_1_40cm_scaffold_4428_26
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22804..23757)
DNA (954bp) protein (318aa)
1-aminocyclopropane-1-carboxylate deaminase (EC:3.5.99.7); K05396 D-cysteine desulfhydrase [EC:4.4.1.15] id=24648327 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
1-aminocyclopropane-1-carboxylate deaminase {ECO:0000313|EMBL:ERH09460.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
1-aminocyclopropane-1-carboxylate deaminase
13_1_40cm_scaffold_4428_27
unknown

Not on your lists

23784..23954
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_scaffold_4428_28
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

23958..24245
DNA (288bp) protein (96aa)
putative ribonuclease; K03684 ribonuclease D [EC:3.1.13.5] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative ribonuclease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC33_GEMAT
3'-5' exonuclease
13_1_40cm_scaffold_4428_29
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

24349..25038
DNA (690bp) protein (230aa)
putative ribonuclease; K03684 ribonuclease D [EC:3.1.13.5] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative ribonuclease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC33_GEMAT
3'-5' exonuclease
13_1_40cm_scaffold_4428_30
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25035..25343)
DNA (309bp) protein (103aa)
pflA; pyruvate formate-lyase activating enzyme (EC:1.97.1.4) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC31_GEMAT
hypothetical protein
Displaying items 1-30 of 32 in total

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